Sample 3300010245

Basic Information
IMG/M Taxon OID	3300010245 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111640 \| Ga0124946
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1900 MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1900 MetaT (Metagenome Metatranscriptome) (version 2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	45242694
Sequencing Scaffolds	18
Novel Protein Genes	21
Associated Families	19

Dataset Contents

Total Genome Size

45242694

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	1
All Organisms → cellular organisms → Bacteria	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Ecosystem Assignment (GOLD)

Name

Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F002229	Metagenome / Metatranscriptome	580	Y
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F007404	Metagenome / Metatranscriptome	351	Y
F008499	Metagenome / Metatranscriptome	332	Y
F010840	Metagenome / Metatranscriptome	298	Y
F015737	Metagenome / Metatranscriptome	252	N
F030445	Metagenome / Metatranscriptome	185	N
F035322	Metagenome / Metatranscriptome	172	Y
F055751	Metagenome / Metatranscriptome	138	Y
F056643	Metagenome / Metatranscriptome	137	N
F070164	Metagenome / Metatranscriptome	123	N
F079731	Metagenome / Metatranscriptome	115	Y
F081941	Metagenome / Metatranscriptome	114	N
F092120	Metagenome / Metatranscriptome	107	N
F093914	Metagenome / Metatranscriptome	106	Y
F097407	Metagenome / Metatranscriptome	104	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0124946_102640	Not Available	674	Open in IMG/M
Ga0124946_106907	Not Available	982	Open in IMG/M
Ga0124946_111963	Not Available	883	Open in IMG/M
Ga0124946_124009	Not Available	599	Open in IMG/M
Ga0124946_125100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	2494	Open in IMG/M
Ga0124946_128902	Not Available	535	Open in IMG/M
Ga0124946_132929	Not Available	595	Open in IMG/M
Ga0124946_133616	Not Available	782	Open in IMG/M
Ga0124946_137561	Not Available	792	Open in IMG/M
Ga0124946_140851	Not Available	668	Open in IMG/M
Ga0124946_142017	Not Available	534	Open in IMG/M
Ga0124946_143936	Not Available	978	Open in IMG/M
Ga0124946_146377	Not Available	869	Open in IMG/M
Ga0124946_153938	Not Available	583	Open in IMG/M
Ga0124946_157911	Not Available	606	Open in IMG/M
Ga0124946_160078	All Organisms → cellular organisms → Bacteria	1845	Open in IMG/M
Ga0124946_171025	Not Available	614	Open in IMG/M
Ga0124946_171101	All Organisms → cellular organisms → Bacteria	1994	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124946_102640	Ga0124946_1026401	F035322	ISKAPNRVFGQYRGYWTDHLTATTTILPLESRRQSLAWRVASVGEYGSKAIAETRRDEAAVAFDRQIAPITVELDNARYELMTRDGITVPNWAADVSDYAIVPGYFRNAKITSRTISRERTTYTVSFNPDDFVNALR*
Ga0124946_106907	Ga0124946_1069071	F081941	VIFVLYIIFNIVLFGILKIEPTNYATNQFFSALEVLIAIVLSLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLDFLLVIPTTFTTTQFELSPSLKLILDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVFVSSIFG*
Ga0124946_109087	Ga0124946_1090872	F015737	MLLGQLYYYNKLLNSLSFPLTKEQLLHLELAGTSKLELNSLYHLSLNDLIRKLKDLFSYSYGQLLQQESLAFATQFWTNLVSATIPTEKTKLNPKTAFQQTLLNWQEKQFTTELIPEILKEGELTTDLEDFALFYGIKVLAILNQDILNTQLGSTEWQLPETTTTPGSLSTKPSILVLTSEIYAPLFINLNCDYLPISEDLPELLKAVTQIITNNPEIKLILINSDNEKIETYLHKHLTSNVLITTIEFTKFAQNAFFDSLVRKTLGVRLT*
Ga0124946_111963	Ga0124946_1119631	F008499	LQAIFGRVSDPSLARLLTSTGRAGHLTRFGVDGFVGNNPGFVVEVKARKRMLTKPAIDALLQTVDRAARFERIPLFVVVFGDDVPARTENGARVDREWVMMPRRVLDELV
Ga0124946_111963	Ga0124946_1119632	F004307	MFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEVEDHELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLSALYGVPQMTDEQLANAEDFVRNVAVGREYQLTLETKPSGWIEIVHIAPTRRLRQRKEATIDEVPF*
Ga0124946_124009	Ga0124946_1240092	F007404	MELIDIFQILAAGHQHLTALDYLYNALAGAIGALTAYLADNEGEVFLPRYDREYHSVELGALGRVLTGAGAGVIVGYSGFVPFAAGIIAPAILPFALDKLMEWFEEKQK*
Ga0124946_125100	Ga0124946_1251001	F093914	IDDVELSRLSGEAYVGGSSDYATVTVGKREPVEVTLTFLYNETTNSASNAIYDHFESPTPMLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0124946_128902	Ga0124946_1289021	F097407	STLAWMQYEQMKKKGKEYTGYVYFFGRTVHRLLHPLYFFHQTEEPKFWFEEQTFDPNNPAETFPTWEAKKACLLVRFREKKFEIYDANFSRKVLSRYNHQIIQWLVKNNYHRLIEFDRCLGFYLDILNWTEEHFISFYENRLVNLLVTDYSPKTLSTTESWCQVV*
Ga0124946_132929	Ga0124946_1329291	F004791	MSEPATIYDVDAIRVDRTALTIREAATLLNRELTPEVIARLVRKAIGNQADQFPIRALKAVYERALPKIFEPDEAIRSKVAGLTPNVATITLGEYHQFLEASERKVAFPDVAATLLVKAYGDDILNEPYAAAAPLLKRIFDAVGDEGNG*
Ga0124946_133616	Ga0124946_1336162	F030445	MLIAITKPHQQFPIPLTSAEYELTTSEDGDERGRITLPPALARSAVMTQIGDELIVYCTQLSKTIWRGQIERIEEARDGNITWYALGFGALQREARISVVQQMSDMTRWKPVGAGMMAGSGFDSREDLWEYELVSV
Ga0124946_137561	Ga0124946_1375613	F092120	GFRDVFPEFVSGLCVFFTVSAPVLDFVRFPVTLLVISFVFWTAWRVFRSLS*
Ga0124946_140851	Ga0124946_1408512	F010840	MNLPFDKPLNKVTNGALAAALVVVVAWALREFVGVDLPAEVQSALALIVGFGISYLVPLSAAEAEAIAQAYYRK*
Ga0124946_142017	Ga0124946_1420171	F055751	ITIEKSDANLREIIEQSSDIYVQVRYQRKRFFRDRTRPAIDFSADNTIIWRFPDTMRVIDISKSPSRVFAQYRGYEIDHLTTTASIASLESRRQLAQRTGSVGEYNNQTIAETRRNEAAIAFERQIAPLSIDLDNTRYELMTASGVTIPNWAADVSDYAIVPGYFRNAQITSRTITR
Ga0124946_143936	Ga0124946_1439361	F079731	RGSLIAGANITLSGPTANRLVGSGDVTITANIPNTGDQDWLVAQNNPTGGAGSVPNNIGQWIYTNGRVGIGTTSPGNFSYPHNILLHVHSDTDLTQIATSGVFNGQVSAPNFGVMWGDRLPEAYSGLAPSNRPTCLISFSNTEGPDRQIIFRVNGNNNMTILGEGRVQVGALPNAAFSSVIERSRFGVVMDLYRANYAIPRNDTIFEAGATVFQGSTGSISNGSDFISTIRSRFDSNSNITQYRFANYYSAARYDHSSRISANAAFDSVIWCWAPQGVTPPPGYQKSVNTNRGIAHVALNIYGNTVGPGGYPGVPPITVPSGIDSL
Ga0124946_146377	Ga0124946_1463771	F005302	MAHFGVIQGLYAGNFAVEISTNGTIWTAVSDATVKIDDVELSRLSGEAYVGGSSDYATVTVGKREPVEITLTFLYNEVTNSATNTIYDQFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0124946_146377	Ga0124946_1463772	F056643	GVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVIKYGERAYEGVTMTTRFAHLVRSPSI*
Ga0124946_153938	Ga0124946_1539382	F070164	CNVYGSGQHQIAGFQLGDRRNEIEAAYKFCFKRGFPIDAGQVMQENLNYSSNATRDAWNYNNPVYAGKIPLGDLNREFTVGDFYPSCSSHECEARTQLLVKHPCMAMYLNTAADTWDGFNDNWGNAQVIVSALHYYILDLKNGAS*
Ga0124946_157911	Ga0124946_1579112	F000642	GRAERAGSFGVQVVSIALALCAVAAALWYMRRREAGAGRLRGWLLLWDELGGWRALSATYGDSGIVADGVTYPASLPVVRVGRDLVWIARCDSAALVEHQALERARESAALASLWRGGGQWLDFLRVAGVVLPAVFAYFTWAQVGALQALVAQILALVGEGR*
Ga0124946_160078	Ga0124946_1600783	F002229	DAIAMWRWMMVTLLTADGVEEIDYLPSDAEIRTSLDDAGLYGMVVDGVTWIRLSSGVGWWTVLAGRRVAATLAALGWCWVTDDGRGYWSPTLASVASEACAMLGVEVDDGD*
Ga0124946_171025	Ga0124946_1710251	F004791	MPEPATIYDVDAVRVDRSVLTIREAATLLNRELAAPVIARLVRKAIGDQADRFPIRALKVVYERVLPQIFEPDAAIRARVEGLVPNVTTITLGEYHQFLEASERGIAFPEVTQTLLAKAYGDDILNEPYAAASLLLKKIFDLVGEEGKG
Ga0124946_171101	Ga0124946_1711012	F081941	MLRNYLRRLNLTTKIALSSLFSLVVILALYIIFNILLFGILKIESTNYIISQFFSSLEILGILSLSLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLNFLLSIPTGFTATQFELSPSLKLLLDTIYMMTGSIYLVLAAGVLYMDLEVNKILAKRYTRWSVIVFSIFFYLISLETERYSMEPNILLTFTGINSLLILVIMFSDLKDLLNSRLNHQNKVSPTEIISFLLLSTTILIGKTLHLVLVLNILG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010245: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1900 MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences