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Sample 3300010216
3300010216: Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 3
Overview
| Basic Information |
| IMG/M Taxon OID | 3300010216 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0121426 | Gp0154207 | Ga0136271 |
| Sample Name | Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 3 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Fidelity Systems Inc |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 59468341 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Freshwater Microbial Communities Enriched With Nitrile Substrates |
| Type | Engineered |
| Taxonomy | Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information |
| Location | Bangor, North Wales, UK |
| Coordinates | Lat. (o) | 53.23 | Long. (o) | -4.13 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F014494 | Metagenome / Metatranscriptome | 262 | Y |
| F027486 | Metagenome | 194 | Y |
| F103798 | Metagenome | 101 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Ga0136271_100083 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani | 23576 | Open in IMG/M |
| Ga0136271_107114 | All Organisms → Viruses → Predicted Viral | 1331 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0136271_100083 | Ga0136271_10008321 | F103798 | MSRPSPHPLDDAGLPGLQEQLALIEPHNLRRLEQPLRHGFADRSTARKGLEIAAGFAIADRLGSIRQKQGPSIGRNGYMLIVWLGSRWLQMEAPANTAIPFTQYRLLHDFGWKDAGKPARQALKRTLLNLQEARWEGEVNDAVTGRKTHEDHFGIIDRVMWPITSNGRVERPGFVFLGSWFLEQLRNEAGEWLDWDIVRDLPPIARKFYGMLENDRFNPRDAGAEWQTYNLASPLFVSLGSACRRERDNVAAVMRACEAIQSLDPRYRFSRERVLDARGGWVNQVLVTRVPRPRGSRRATGRRTVSPQAG* |
| Ga0136271_102375 | Ga0136271_1023757 | F014494 | VSVLKHFECDHCGSDGKITIKGDEIVLSDIVYCPVCGGDIYEDEDFNEDE* |
| Ga0136271_107114 | Ga0136271_1071142 | F027486 | MTDKTQICRSFRQDFPEFVSRAEALGVRISLGEGRRNGRERVFWLDGYRQLTGYTTKRDGSPFRHEDAVRNIDKALTEIEDDRAIMTGLTVAERFARVIAEFRQMKPQARMIGEVRLPGGDSGHCFFMADYDGGVNLHGIGQDVARGKAGWRQGETAADQMARFCDALETDFKAKQAEGAA* |
