x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy.
OK
Sample 3300010213
3300010213: Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 4
Overview
| Basic Information |
| IMG/M Taxon OID | 3300010213 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0121426 | Gp0154208 | Ga0136273 |
| Sample Name | Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 4 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Fidelity Systems Inc |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 48531499 |
| Sequencing Scaffolds | 1 |
| Novel Protein Genes | 1 |
| Associated Families | 1 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Freshwater Microbial Communities Enriched With Nitrile Substrates |
| Type | Engineered |
| Taxonomy | Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information |
| Location | Bangor, North Wales, UK |
| Coordinates | Lat. (o) | 53.23 | Long. (o) | -4.13 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
|
|
| Zoom: |
Powered by OpenStreetMap © |
Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F071164 | Metagenome | 122 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Ga0136273_103686 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1148 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0136273_103686 | Ga0136273_1036861 | F071164 | MRISEMLNAIASWLESPDNEAILLAEYDDDCLQIVANSCVQAAALLKVTAEAVEDIEPPEESKITPEAIDDLAALATAFDDSGDPELKKQASVIDELLLTIAAPSDAIVQRKDLIDQRIDELKKKYEQPTKDLAETNKIADSEKLIEQSNMTKQIDIQQSPLSTRYCPDHAGAQIARVGEHIWQCELDKKIYDFESGFTLNDGTKVPGGDVANQTQTQNIPFYAIF |
