Sample 3300010207

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300010207

3300010207: Littoral zone phototrophic microbial communities from Lake Waban, Wellesley, MA - FC X16C

Overview

Basic Information
IMG/M Taxon OID	3300010207 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0120452 \| Gp0154463 \| Ga0136445
Sample Name	Littoral zone phototrophic microbial communities from Lake Waban, Wellesley, MA - FC X16C
Sequencing Status	Permanent Draft
Sequencing Center	Marine Biological Laboratory
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	65435588
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Phototrophic Microbial Communities
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lake → Sediment → Littoral → Phototrophic Microbial Communities

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater littoral zone → lake sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Lake Waban, Wellesley MA
Coordinates	Lat. (^o)	42.2876	Long. (^o)	-71.30117	Alt. (m)	N/A	Depth (m)	.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014281	Metagenome / Metatranscriptome	264	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0136445_100178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	33112	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136445_100178	Ga0136445_10017816	F014281	LQSTIDIGIGCNGAAESKMKIYLLMTLIGAILTAVHLTTVPERKSETLPQ*

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