NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010177

3300010177: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0830 MetaT (Metagenome Metatranscriptome) (version 2)



Overview

Basic Information
IMG/M Taxon OID3300010177 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046783 | Gp0111635 | Ga0124944
Sample NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0830 MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size44785070
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F015737Metagenome / Metatranscriptome252N
F016404Metagenome / Metatranscriptome247N
F061617Metagenome / Metatranscriptome131N
F065815Metagenome / Metatranscriptome127N
F069792Metagenome / Metatranscriptome123N
F073593Metagenome / Metatranscriptome120N
F073601Metagenome / Metatranscriptome120Y
F081941Metagenome / Metatranscriptome114N
F098323Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0124944_102053Not Available797Open in IMG/M
Ga0124944_102958All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria5271Open in IMG/M
Ga0124944_104174Not Available524Open in IMG/M
Ga0124944_104373All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes6391Open in IMG/M
Ga0124944_118184Not Available3652Open in IMG/M
Ga0124944_120454Not Available2184Open in IMG/M
Ga0124944_121163All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae3647Open in IMG/M
Ga0124944_130294Not Available685Open in IMG/M
Ga0124944_133022Not Available736Open in IMG/M
Ga0124944_136923All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1409Open in IMG/M
Ga0124944_144345All Organisms → cellular organisms → Bacteria2710Open in IMG/M
Ga0124944_154757Not Available973Open in IMG/M
Ga0124944_163198Not Available724Open in IMG/M
Ga0124944_168165All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium1698Open in IMG/M
Ga0124944_175123Not Available1092Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0124944_102053Ga0124944_1020531F098323MLKNKSWILLVIFALFGFINTSIPVWTQENTTTQFDNAILAKNQQLIVPIGRADTSVDPACKNLINEIVKCPSGNGTCAAEKLRKNNNLTENAKKCVGLNSNNLNENQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVKKPSNWTDQDIVDKCNSTIPANNSSKKLVKLVPDNNGQLKEVLATRINVKEKLL
Ga0124944_102958Ga0124944_1029586F073601QGRLVGAGCPLLGMSLALGRAMLQAKATCLVIMVLPAKRREGQRMFWVLHFAWRCAIVKIVACGSIIRTLLVEKKALAGMGVLLQQG*
Ga0124944_104174Ga0124944_1041741F016404VETDALTEENRNAVLWALLHLALDPDAPAGARVAAARLFLAQFGETNAERDVLVVVDEAAFVET
Ga0124944_104373Ga0124944_1043737F015737MLLGQLYYYNKLLNSLSFPLTKEQLLHLELAGTSKLELNSLYHLSLNDLIRKLKDLFSYSYGQLLQQESLAFATQFWTNLVSATIPTEKTKLNPKTAFQQTLLNWQEKQFTTELIPEILKEGELTTDLEDFALFYGIKVLAILNQDILNTQLGSTEWQLPETTTTPGSLSTKPNILVLTSEIYAPLFINLNCDYLPISEDLPELLKAVTQIITNNPEIKLILINSDNERIETYLHKHLTSNVLITTIEFTKFAQNAFFDSLVRKTLGVRLT*
Ga0124944_118184Ga0124944_1181842F073593MFLKGLNKIHIHLGKIRFFLLIFVFVYFFSLSLLVHAQTTTSSNPTENNPILSQLSGLNILQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVAVIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFATLLINAAINLIVESAFPKIGTSQCPPEQVVRSNIFGDYCINLDINPVIDFAIVVINSLLLPASAIIAALFFLAGLYNLLISGGNATRVETGWKYMKNSILGLVAGLLSYTVINLVYSILLIFFK*
Ga0124944_120454Ga0124944_1204541F065815NKPMQPETNNSNPQANQPTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLIGLILGMYWLVSNFVNYLNITFWLK*
Ga0124944_121163Ga0124944_1211635F073601MLQAKATCLVMVLPAVVRESQRVFWLLHFAWRCAIEIMECGNIIHTLPVEKKVLAGKGVLLQQG*
Ga0124944_130294Ga0124944_1302941F000642MQVVSIALALCAVAAALWYMRRREAGAGRLRGWLLLWDELGGWRALSATYGDSGIVADGVTYPASLPVVRVRGELVWIARCDSAALVEHQALERARESAALASLWRGGGQWLDFLRVVGVVLPAVFAYATWSQVAALQSLAVQILSLVDE
Ga0124944_133022Ga0124944_1330221F081941SLEILGILSLSLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLDFLLVIPTTFTTTQFELSPSLKLILDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVLMLNIFG*
Ga0124944_136923Ga0124944_1369233F002970MTFVRYWSVIAMSYSTVVDIIEMLAGLNVQYNSATVPALRLTSQASWSDAAQLPMRIVPVLGGLRLVEGGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVIKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0124944_144345Ga0124944_1443453F081941MLRNYLRRLNLTTKIALSSLFSLLVIFVLYIIFNIVLFGILKIEPTNYAANQFFSALEVLIAIVLSLFIVSGFHFILIQLSNLPYSDYKLEITTAIFFVLNFLLSIPTGFTATQFELSPSLKLLLDTIYMMTGSIYLVLAAGVLYMDLEVNKILAKRYTRWSVIVFSIFFYLISLETERYSMEPNILLTFTGINSLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSTTILI
Ga0124944_154757Ga0124944_1547571F069792MELKQTGSGRYGFFGRQTLAFLILFLLVFSLPSSNFRKSEVLVDPKTVISSNFFLKQVKPETLKNSLPSLQETKISLIFNRQDKRFLFDVSGNPVFNKTIVQAYSKSFIYETPNLDLNLETFRKAQTTKGQKMRQLPLDDLIPRPKNPDPAKTNLLLYPKYNIRAPIIYTTAADFY
Ga0124944_163198Ga0124944_1631981F061617MAKTLNALANRKKVRTRQILNQSNLYYLNNRRLSFLPKIFLGFSIVLVICGLLWYLNVFDLQTVVGQPVSHQSEQLTALDLIRQLNWNTTSQANTTDEQTANWQSLNSDKLVLLTAQNGATCALSLQPNPPENIKPIVQNQPQGWWLPSHCAVSELVAVQIVRLNST
Ga0124944_168165Ga0124944_1681651F004791GTMPEPATIYDVDAIRVDRGVLTIRGAAKLLNRELTAPVIARLVRNAIGDQADRFPIGALKVVYESVLPKIFEPDSAIRSRVEALMPNIATITLGEYHQFLEASERGIAFPEVAQTLLTKAYGDGILEEPYAAAALLLKKIFDLVGEEGKG*
Ga0124944_175123Ga0124944_1751232F005302MAHSGVVQGLYAGNFAVEISTNGTTWTAVSDAIVKIDDVELSRPSGEAYVGGASDYATVTVGKREPVEITLTFLYSEAPNATAFVIYDQFESVNPALAVRWSPVGIKSNAIAFATSNDGVTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYQLGAAPVDLSG*
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