Sample 3300010171

3300010171: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0800_B MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information
IMG/M Taxon OID	3300010171 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111623 \| Ga0124935
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0800_B MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	24936990
Sequencing Scaffolds	23
Novel Protein Genes	35
Associated Families	26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	1
Not Available	21
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.539	Long. (^o)	-110.798	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N
F004367	Metagenome / Metatranscriptome	441	Y
F005631	Metagenome / Metatranscriptome	394	N
F006938	Metatranscriptome	361	N
F007172	Metagenome / Metatranscriptome	356	Y
F007225	Metagenome / Metatranscriptome	355	Y
F007753	Metagenome / Metatranscriptome	345	Y
F010840	Metagenome / Metatranscriptome	298	Y
F011940	Metagenome / Metatranscriptome	285	Y
F012676	Metagenome / Metatranscriptome	278	Y
F014978	Metagenome / Metatranscriptome	258	Y
F015735	Metagenome / Metatranscriptome	252	Y
F016404	Metagenome / Metatranscriptome	247	N
F037242	Metagenome / Metatranscriptome	168	Y
F039156	Metatranscriptome	164	N
F054065	Metatranscriptome	140	N
F065816	Metagenome / Metatranscriptome	127	N
F077351	Metatranscriptome	117	N
F084273	Metagenome / Metatranscriptome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0124935_100118	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	1129	Open in IMG/M
Ga0124935_101315	Not Available	555	Open in IMG/M
Ga0124935_104990	Not Available	504	Open in IMG/M
Ga0124935_108947	All Organisms → cellular organisms → Bacteria	2034	Open in IMG/M
Ga0124935_110072	Not Available	628	Open in IMG/M
Ga0124935_114631	Not Available	1075	Open in IMG/M
Ga0124935_114752	Not Available	575	Open in IMG/M
Ga0124935_114824	Not Available	531	Open in IMG/M
Ga0124935_118750	Not Available	603	Open in IMG/M
Ga0124935_121136	Not Available	612	Open in IMG/M
Ga0124935_124422	Not Available	591	Open in IMG/M
Ga0124935_127045	Not Available	1063	Open in IMG/M
Ga0124935_129638	Not Available	1905	Open in IMG/M
Ga0124935_130129	Not Available	723	Open in IMG/M
Ga0124935_134489	Not Available	581	Open in IMG/M
Ga0124935_137102	Not Available	502	Open in IMG/M
Ga0124935_137343	Not Available	520	Open in IMG/M
Ga0124935_141430	Not Available	565	Open in IMG/M
Ga0124935_145375	Not Available	596	Open in IMG/M
Ga0124935_147141	Not Available	505	Open in IMG/M
Ga0124935_147381	Not Available	789	Open in IMG/M
Ga0124935_151051	Not Available	510	Open in IMG/M
Ga0124935_152301	Not Available	620	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124935_100118	Ga0124935_1001181	F004367	MDNGTERNERDRSEAWVESLLTNAGASVGRLLDDRQVNAVSLALEVFAYLLAALPADRVEVRDVIKLLKYFSRGVNNAKGE*
Ga0124935_101315	Ga0124935_1013151	F007753	LGLDKPGALARYFAERWLEEPSDKGEQLIAWLLEAALGRNTLYFIEKTKEYIDAWPRPDRHRIWPVLPWKNNPSHANQPRWRGNREIVPVDAFNGFAITGDPVEDTIIPHAILVWTCMNDRPWSEEVYHCWLDTLLKAGSAEAAYLAASLWPAHDLMATVTYRPARWLVYRGQLDAEAERLILTE
Ga0124935_103743	Ga0124935_1037431	F006938	MDREVIMLRIRVTIGRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVETLFGKEVRDRARNYTRSGATLELLYESLGKYDHGDVAWSALSEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYTEGLARAQNIMDKAMRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFELNLIEGAFADAYQEALLARNAPVLPRTN
Ga0124935_104990	Ga0124935_1049901	F039156	TSALIVVGAVITIGLVAVALTRLWVKQISLRLDESLEFDQKLVPLRNALTALRDATAQAHSIARELQTLQQLREEASTVITELRALREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIV
Ga0124935_108947	Ga0124935_1089474	F084273	DDGTLGGVTVQGSFSGNYPPLRNGIEIRWVQLISTTHPLNTNAGANTPYFDPGELDMTGDYDPFYWNTTLQGKDNNNYPQFWYKNYQFNGGQGITFYDQPKRLKSSAPVSWLAELNLVCWETGTKNFSVLWTGTYGFNIAQNGNVTVNGWNELANPAWLTQARLTQYFQDWTMSDACQNCLVPEPVFLQMGALLGMSGLGVVASRRRAGRRSS*
Ga0124935_109485	Ga0124935_1094851	F007225	PQKGGCVMRKFAAITALLAVATTASFAQFGIYGATALGGSTGLGGGFQGGFVNGQEFDLLIRMDVPPGVPRFPRNGGGSLAFNFNPRYIDIKVFDTATGNPITIAQAVAGAEVGQIVNLGGYAYPGTTIAGRDLVGAAAFGARKNPDGTIGVRIAFLSTSRAVSNATHAEPFMRTGPEDDDGNRRLPVVIVNWLNIRDDFGMNGTYTVQNEGSFVLVYDDNGNFRTQQ
Ga0124935_110072	Ga0124935_1100721	F054065	MAAFPLVSHRYRLLIVKAVDRWVHASGFDWAKERIGALVQYLLKLRAGENPCRPPWWSPRYLLYAERVATTAPFEKFLQLVQAWRTAFTAYGRLKTVPSRKDVEKFERAVGSARVLKVPLASGRVVEVDTEDWRSRFPFRAHFGVSPRQALPEVRIR
Ga0124935_110824	Ga0124935_1108241	F006938	MYREVIMLRIRVTIGRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVEVLFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALSEDVRSRLADAMNEAYKVFGVRGLTPKPLNGVRVEPSSPGASWRLYGRTGKRTDLSIYAEGLARAQNIMEKAMRRKQPYCELAPCLAYLRTQLAPRNSPKVRLV
Ga0124935_114631	Ga0124935_1146311	F000642	MQEISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLPAVYGDSGIVADGVTYPAALPALRAGRELVWVARCESAALIEHQALERARESAALASLWRGGGQWLDLMRVLGVVLPAVFAYFTWAQVSALQSLVVQILALVGER*
Ga0124935_114752	Ga0124935_1147521	F039156	TVLNPFSNMSVLIVVGAVITIGLVAVVLTRLWVKQISLRLDESLEFDQKLVPLRNALTALRDATAQAHSIARELQTLQQLREEASTVITELRGLREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRETTR
Ga0124935_114824	Ga0124935_1148241	F039156	VTIGLVAVVLTRLWVKQISLRLDESLEFDQKLVPLRSALTALRDATAQAHSIARELQTLQQLREEASTVITELRGLREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRETTRLREE
Ga0124935_118750	Ga0124935_1187501	F002229	MVTLLTLDGVEDVDYAPSDAEVRASLDDAGLYGMVLNGVTWMRLPSGAGWWTVVCNRRVTATPAAVGWCWVADGLGARGYWSPALACVPTEVRALCGDGCADDEDEEGGDGDG*
Ga0124935_118750	Ga0124935_1187502	F002795	MATDSGLVLRGMVAAYREFVSRRDGKLYRVVTVFGDLVAGGTVLCAVDGYDVFVDSPGYTRGEMVELPARLQFVRDASGRPVVRLYVDEGV
Ga0124935_121136	Ga0124935_1211361	F077351	PGAQDLLLSEKEWLVLWRGVLATRCLFVDPEGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAVMEMSRSLPSDVDAAPSFVVNVVERGESVTVQSSYPLEDITPRHTLWSAIALSPVPEYGPPRTVYMEWDRTLIASEILRAIKEEDD*
Ga0124935_124422	Ga0124935_1244221	F065816	VFAVVQRVQLNGAPAWRYAAGIGRWTTEGYKDTDRSAKVAATKAARWYALRQDDFKRVGRKLRLLWAQQGIEDVEPDRKYPYPWRAEHWYEMGLCWTWDYDLTMWRSGAWRLWYNKGTGWMLRYPDDSIQVLHVEYRHDAMREAAFWINLALEE*
Ga0124935_127045	Ga0124935_1270451	F000855	MDWLEDFFSKVVSWFDERAANVYNGIVAFINSLVEIWNGWMDALLHPARAMPSIPALRWVVDWLGGIVDYTRLMYMLVDYVAYAAIVQQALAAQLTIVFVGLGFRAWLVLRRIVLVS*
Ga0124935_127045	Ga0124935_1270452	F001381	MQYVIATLYVLVWFALAAVAALVLPRWALPAVLVQLAVAYVMLRSWLTAACGDD*
Ga0124935_127045	Ga0124935_1270453	F037242	LARFDVQTISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLHDDLGGWRALPAVYADSGVVADGVTYPASLPVVRAGRELIWIARCDAAALIEHCALE
Ga0124935_129638	Ga0124935_1296381	F011940	PPPLGDDVSWDGSLVGDLLDGLEALGRAVAPPASRICDLPVPVLPDAPEYGFRDALPDFVAGLCGFFSVASPVLGFVRLPVTLLVVGFVFWSAWRVFRSLS*
Ga0124935_129638	Ga0124935_1296384	F000642	MQEIGVALALCAVGAAVWYMRRREAGAGRVRGWLLLYDAVGGWRALPASYGDAGIVADGVTYPASLPALRAGRELIWIARCESAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAEFAYFTWAQVAGLQALVAQILALVGER*
Ga0124935_129638	Ga0124935_1296385	F002978	MSVRDWRVMLVPWADRRLWFVQARRGRRVVWGVVYDAADPESVSLARRAVATLRSAGADCSALPASLPGAPPGAPGA*
Ga0124935_130129	Ga0124935_1301291	F004024	MHSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPLIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER*
Ga0124935_134489	Ga0124935_1344891	F014978	GGDARAPRLHVVRSFRLRRMRARTPVHQGRAWFGHSAFAARGRGRPRSQVARGSVIPPSLRAGGDARAPRMRMVRSFRLRRTRAGTPALPGRTWFGHSAFAACGRGRLRSQDVRGALIPPSPHAGEDARAPRSHVVRSFRFLRMRAGTPALPDCTWFGHSAFAACGRGRPRSQVARGSVISLSPHAGGDARAP
Ga0124935_137102	Ga0124935_1371021	F007172	QRRTTMNTLERRTFAAALRAAKRDAYCRTVGGFVIVQMSDGTIDWFPAGQPPHRDGEEDRGAVILGKWRWNYRRWSRIA*
Ga0124935_137102	Ga0124935_1371022	F012676	MVTNRVERNDMNSIKIATGWDGSPMSLTHPEHGWIRFLEARGIAYAAYLSEPAGWRIVVEDEEKFMRLIPKLRKYNIHGIYTWTYDIHP*
Ga0124935_137343	Ga0124935_1373432	F005631	MRVSVSVDLDNALRKLLPRSAQIEAALDAGAAAAHSVMQVYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHRGRWASLKDAAEAALKEALAVLKERGR*
Ga0124935_141430	Ga0124935_1414301	F007753	FDTGHKPGALTRYFAKRWLKEPSAKGERLIAWLLEAALGQNPLYFIEKTKEYVDEWGGSGEIVPASAFDGFEITGDPVEDTIIPHAVLVWTCMNDRPWPEEVYHGWLDTLLKAGSAEAAYLAASLWPARNLMAKVTYRPARWLVYRGQLDAEAERLILTEMLKGASGPRTSLYGSFEYDDATYPELLP
Ga0124935_145375	Ga0124935_1453751	F010840	LPFSQPLDKITYGALAAATVIILTWALREFVGIDLPAEVQAALAVIFGYFVSYHIPLTEAEAEAIARKYYKYK*
Ga0124935_145375	Ga0124935_1453752	F016404	MTTEELLTDESRAAVLRALFMIVVNDSEPASARVAAARLFLSQFDEQPNADQNVLVIVDEAAFVKTV*
Ga0124935_147141	Ga0124935_1471411	F002795	MMPVTSGLVLRGMVAAYREFVARKDGKLYRVATVFGDLVLGETVLCSVDGYDVFVDSPYARGEMVELPARMQFLRDSSGRPVVRLYVDE
Ga0124935_147381	Ga0124935_1473811	F002372	MPTRREDALWSVVHRRSSHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDAPPIVLRSAYVQANRQWERHSEFTLRVVEEALRLVEWYRADPSLGGAEGV*
Ga0124935_147381	Ga0124935_1473812	F015735	MVVYHHWSVEWHPRDVDPPGGLPRVVCIARRVVVDPFAGLGLFPADVDRAVRFWNLVASGGARDYGAGYEVVWRLSVVADDAGGDAPSGDWSDDPVYRARRRLLWWIMRSQCPIPALADHFADEHFRDRPEYFGLPEPGA*
Ga0124935_148925	Ga0124935_1489252	F006938	VSDIPLKPLLATVKTGHVVDRRAAELVTKLFGREVRDYARSFTRSGATLELLYESLRKYDHNDVAWSALSDGVKERLRKAMNLAYQVFGVRGLTPKPLNEVSVEPSSPGASWRLFGRQGKRTDFSVYTEGLARAQLL
Ga0124935_151051	Ga0124935_1510511	F000855	ELSAAVHNGVIEWVNSLINVWNGWMDSLLHPAQAMPSNPALRFIVDWLGDIADYTRLMYMLVDYVAYASVVQQALIAQLTIVTIGLGFRAWLVIRRVVLVS*
Ga0124935_152301	Ga0124935_1523011	F077351	VGRIIRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAIMEMSRSLPSDVDAAPSFVVNVVERGESVVVQSSYPLEDITPRHTLWSAIALSPVPEYGPPRTVYMEWDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010171: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0800_B MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences