| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300009917 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116874 | Gp0151167 | Ga0132239 |
| Sample Name | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 8m depth; RNA IDBA-UD |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Marine Biological Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 29885096 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 12 |
| Associated Families | 12 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 9 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater biome → meromictic pond → pond water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Falmouth, Massachusetts | |||||||
| Coordinates | Lat. (o) | 41.548517 | Long. (o) | -70.622961 | Alt. (m) | N/A | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005089 | Metagenome / Metatranscriptome | 412 | Y |
| F015858 | Metagenome / Metatranscriptome | 251 | Y |
| F025879 | Metagenome / Metatranscriptome | 200 | Y |
| F025994 | Metagenome / Metatranscriptome | 199 | Y |
| F029761 | Metagenome / Metatranscriptome | 187 | Y |
| F042640 | Metagenome / Metatranscriptome | 158 | N |
| F058819 | Metagenome / Metatranscriptome | 134 | N |
| F073267 | Metagenome / Metatranscriptome | 120 | Y |
| F073276 | Metagenome / Metatranscriptome | 120 | N |
| F076034 | Metagenome / Metatranscriptome | 118 | Y |
| F091416 | Metagenome / Metatranscriptome | 107 | Y |
| F105059 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0132239_102557 | Not Available | 1015 | Open in IMG/M |
| Ga0132239_103015 | Not Available | 945 | Open in IMG/M |
| Ga0132239_104210 | Not Available | 809 | Open in IMG/M |
| Ga0132239_104807 | Not Available | 764 | Open in IMG/M |
| Ga0132239_105561 | Not Available | 720 | Open in IMG/M |
| Ga0132239_105754 | Not Available | 710 | Open in IMG/M |
| Ga0132239_109760 | Not Available | 571 | Open in IMG/M |
| Ga0132239_112359 | Not Available | 520 | Open in IMG/M |
| Ga0132239_113286 | Not Available | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0132239_102557 | Ga0132239_1025571 | F073276 | RVRSQIYTEEGENSTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYNEQGDVDTTLQITKWSNLIAFAEKFVLHLTTTKTTNSIPEEVNLTLDSFTSIQRLITVQATFNISIKSEC* |
| Ga0132239_103015 | Ga0132239_1030151 | F025879 | HEYYTKLQYCKVGVQMRQSNYGWSVSGTDCMMNGTPMIFHDSLCYREIDPSGLFFKYKKDFFNLLNSFLDDDEFRIKHELRSIERAKELSSNEANMIKQLHKKLN* |
| Ga0132239_104210 | Ga0132239_1042101 | F076034 | MNDSSPQFKMREPIITIAAKQTPVIDRLHDCMTQALAYATAIRDNAQDDGHPIPIDLVTSFQNDYNKIIGSLHEAHHLTS* |
| Ga0132239_104304 | Ga0132239_1043041 | F105059 | CYNWGYDVFVDGEKIGQINDTPEELADLLNEYFNTKEK* |
| Ga0132239_104807 | Ga0132239_1048072 | F073267 | MLYSIHNQPPAPFPHPIPMPDGFTRTDASTFTQEEIQAAGYSGPYTEPSYNSSTEQLLWVNGEYVIEALPPVPRWVDFSSVMMSLPSINIMLGTLLQNAPGLYGGLVVGLQNASEGDTRVFLNSWNAGYAMELISPELITTVQEIAGEYDLPQSFIQALSPQT* |
| Ga0132239_105561 | Ga0132239_1055611 | F029761 | MKKVVDVQPGFISNEVYKPEQFGNSVKLIDSNGNKVGTMGVSIGTRKQAIKEGSAIQAFMNKNGKKTYRRVDMSVYDSL |
| Ga0132239_105754 | Ga0132239_1057541 | F025994 | MSKQEIQHLIDHAIREHELRVALWSGLLGLLLLLGTWHAIWMCR* |
| Ga0132239_107515 | Ga0132239_1075153 | F091416 | MKQFKNILLRILATFAATGLGVVGAGTIAGVPVWKAV |
| Ga0132239_109760 | Ga0132239_1097602 | F005089 | LHSIKLTETLALENYNQRNGVVDYRLDGVCNHYFPIYEGVNPSYRNGEICLTCKVAKTVKGQLRYTFQIDGKRIAEKRIVSEFLARGAFQG* |
| Ga0132239_112203 | Ga0132239_1122031 | F058819 | VELHWFGKHGGAESYQFRGLIQDLQNANADIINISQPWNVAASPRANSFDKTIIKTNQRVNKRKQIKCSIPHEDAVYVASLFYSPEVYIIEGGKYVNVTISNAEILTDDNRATDIEVNFEIVYPNKPTAQL* |
| Ga0132239_112359 | Ga0132239_1123591 | F042640 | YEELVHTARRFHDSPRDLVHHTYLQCINALESNQNILENLPGYFHTSMWNQAQNLFRKLYEIHETPTDTLVSDYDISEAIKREEAMIMANHLSWFDRTVLSLYLDGWSMAQVARESGINVSVLYESISQSKNKLRYVISKRTKEK* |
| Ga0132239_113286 | Ga0132239_1132861 | F015858 | MSNLISWGTVYCETWWGDTDRTTLSIQNESAPPCFAPINDIAIAFQERVEADGGVLEGYACLVAALQDLGEDNYYELFDTYIQRMTDDGATLEGRDCLVEQLFNLN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |