| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300009903 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116874 | Gp0151165 | Ga0132237 |
| Sample Name | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 3m depth; RNA IDBA-UD |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Marine Biological Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 6815191 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 9 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium | 1 |
| Not Available | 4 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater biome → meromictic pond → pond water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Falmouth, Massachusetts | |||||||
| Coordinates | Lat. (o) | 41.548517 | Long. (o) | -70.622961 | Alt. (m) | N/A | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005974 | Metagenome / Metatranscriptome | 384 | Y |
| F010159 | Metagenome / Metatranscriptome | 307 | Y |
| F013634 | Metagenome / Metatranscriptome | 269 | Y |
| F017644 | Metagenome / Metatranscriptome | 239 | Y |
| F025485 | Metagenome / Metatranscriptome | 201 | Y |
| F031077 | Metagenome / Metatranscriptome | 183 | Y |
| F042640 | Metagenome / Metatranscriptome | 158 | N |
| F048168 | Metagenome / Metatranscriptome | 148 | Y |
| F078633 | Metagenome / Metatranscriptome | 116 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0132237_100318 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium | 975 | Open in IMG/M |
| Ga0132237_100514 | Not Available | 825 | Open in IMG/M |
| Ga0132237_100782 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 696 | Open in IMG/M |
| Ga0132237_100878 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 662 | Open in IMG/M |
| Ga0132237_101211 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 585 | Open in IMG/M |
| Ga0132237_101550 | Not Available | 532 | Open in IMG/M |
| Ga0132237_101743 | Not Available | 509 | Open in IMG/M |
| Ga0132237_101811 | Not Available | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0132237_100318 | Ga0132237_1003181 | F010159 | MSWSIPALIEADIKSGKAQYRTFQTGNGGQSILPVPSNSYVVIFGYDFSPAGGGMTRGTAEVEPNNLTISDGFLRPFETQQISFYTGTDFYPFIHHVDLKSMAYLNSWNAANPDLNFGLTVRYAQEIDNTPIARQVYITSTNDVTITHGLVVTTPRASANAIPVTNRTPLGLTYGGSGQVINTQTNYGPAGTPQQFMQPSPKDYQDFAFGLLPANADGQAFATP |
| Ga0132237_100318 | Ga0132237_1003182 | F048168 | AMQLRLTLTINNDVVIDDVCAYDLGAAATAGITSGFPHYIPFPRALTGQDTILLRVTNSSGASQLLNAVVFYKNEI* |
| Ga0132237_100514 | Ga0132237_1005141 | F013634 | MAIALGPLLGAGLGQLQQSKIDKALAGQKTYTKPKTIFGKLIGGVSGRTAAAEASALTKTAPLSEGVMNSLQQRQSLPITGGFSFGGEATKRSYLPFAIVAAIVAAFYFLRGKKGGRRRR |
| Ga0132237_100782 | Ga0132237_1007822 | F005974 | LRGNPLERAQVYEILNRIGAMSVEEIRKEEDLLK* |
| Ga0132237_100878 | Ga0132237_1008782 | F031077 | FPLTNVGANGNQFQVDEALLVEKIGFFIPAAADGIAYTGLAGESVKFDLIVGNKTVLKDVACEFGGEQAFFNDGTLGSAVIDLEGVGILIPPQVEYYVVAKSYTTESRLADSIRLGCYLFGTGALLNFNTTI* |
| Ga0132237_101211 | Ga0132237_1012111 | F017644 | MATGFPATTGDVLTAAAFNGLVAFTVGAAETDNYTAVAADQYQVLVSMNKATAVDFKIPTNA |
| Ga0132237_101550 | Ga0132237_1015501 | F078633 | DEIQDRVAVIPPDRLNAKHLFAIYIPVIRHTWQPDLDREWYAAVVTKEQVHGPTFEVKAHPDQTAAWVAFATWIGDLVRNPQKFTA* |
| Ga0132237_101743 | Ga0132237_1017431 | F042640 | HHTYLQCINALESNQNILENLPGYFHTSMWNQAQNLFRKLYEIHETPTDTLVSDYDISEAIKREEAMIMANHLPWFDRTVLSLYLDGWSMAQISRESGINVSVLYESISKSKNKLRHVISKRTEEK* |
| Ga0132237_101811 | Ga0132237_1018112 | F025485 | MNNARKFLPIIIGSLVAFIVFWISRKMRKSNTANQERFTILEKARGAKLAKSILKKSENEESPTYSEIPA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |