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Sample 3300009861
3300009861: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 3, 6m depth; RNA IDBA-UD
Overview
| Basic Information |
| IMG/M Taxon OID | 3300009861 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0116874 | Gp0151116 | Ga0132184 |
| Sample Name | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 3, 6m depth; RNA IDBA-UD |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Marine Biological Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 3240421 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 1 |
| Not Available | 2 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
| Location Information |
| Location | Falmouth, Massachusetts |
| Coordinates | Lat. (o) | 41.548517 | Long. (o) | -70.622961 | Alt. (m) | N/A | Depth (m) | 6 |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F003081 | Metagenome / Metatranscriptome | 508 | Y |
| F007964 | Metagenome / Metatranscriptome | 341 | Y |
| F060948 | Metagenome / Metatranscriptome | 132 | Y |
| F085704 | Metagenome / Metatranscriptome | 111 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0132184_100175 | Ga0132184_1001751 | F003081 | GLVIELREEMFNNTRFGAEVFYMHVRGVDTLMVLSYLHILKKIYLKNYVTAESDG* |
| Ga0132184_100401 | Ga0132184_1004011 | F060948 | VFFGLALCCTHLSEITLTIAANIMHTFFFFYGKFYWWLFTDKQLCSDTLIRLAYGHYVIAFYLGYASFIHTIDMHYDWKNETAMDGMAANLT* |
| Ga0132184_100724 | Ga0132184_1007242 | F007964 | MANAYTDTSSGSFGGTVGGAGLVQKAYDRLLEFALRSEPLIRSVADK |
| Ga0132184_100779 | Ga0132184_1007791 | F085704 | DHNIATAGIIDESAFLVAPNSVYVWESPVTNLRVNVLTSGEIEINMYGYLAIHASAAGAGIRRYNLA* |
