| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300009835 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118754 | Gp0148681 | Ga0130084 |
| Sample Name | Sorghum rhizosphere soil microbial communities under drought stress in Albany, CA - sample B |
| Sequencing Status | Permanent Draft |
| Sequencing Center | QB3 Vincent J. Coates Genomics Sequencing Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 46089914 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 17 |
| Associated Families | 14 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola | 1 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Amoebozoa incertae sedis → Stereomyxa → Stereomyxa ramosa | 1 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Sorghum Rhizosphere Soil Microbial Communities From California, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Sorghum Rhizosphere Soil Microbial Communities From California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → rhizosphere → soil |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | California,USA | |||||||
| Coordinates | Lat. (o) | 37.887207 | Long. (o) | -122.304401 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000360 | Metagenome / Metatranscriptome | 1232 | Y |
| F000654 | Metagenome / Metatranscriptome | 958 | Y |
| F001011 | Metagenome / Metatranscriptome | 806 | Y |
| F001111 | Metagenome / Metatranscriptome | 774 | Y |
| F001256 | Metagenome / Metatranscriptome | 736 | Y |
| F003556 | Metagenome / Metatranscriptome | 479 | Y |
| F009870 | Metagenome / Metatranscriptome | 311 | N |
| F018518 | Metagenome / Metatranscriptome | 234 | Y |
| F020944 | Metagenome / Metatranscriptome | 221 | Y |
| F022569 | Metagenome / Metatranscriptome | 213 | Y |
| F035908 | Metagenome / Metatranscriptome | 171 | Y |
| F083540 | Metagenome / Metatranscriptome | 112 | N |
| F091155 | Metagenome / Metatranscriptome | 107 | Y |
| F099083 | Metagenome / Metatranscriptome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0130084_1016000 | Not Available | 551 | Open in IMG/M |
| Ga0130084_1040135 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 597 | Open in IMG/M |
| Ga0130084_1052310 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 733 | Open in IMG/M |
| Ga0130084_1066261 | Not Available | 513 | Open in IMG/M |
| Ga0130084_1066626 | Not Available | 622 | Open in IMG/M |
| Ga0130084_1074314 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola | 621 | Open in IMG/M |
| Ga0130084_1078301 | Not Available | 558 | Open in IMG/M |
| Ga0130084_1086636 | Not Available | 731 | Open in IMG/M |
| Ga0130084_1088507 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Amoebozoa incertae sedis → Stereomyxa → Stereomyxa ramosa | 552 | Open in IMG/M |
| Ga0130084_1097002 | Not Available | 830 | Open in IMG/M |
| Ga0130084_1100654 | Not Available | 502 | Open in IMG/M |
| Ga0130084_1101195 | All Organisms → cellular organisms → Eukaryota | 540 | Open in IMG/M |
| Ga0130084_1105356 | Not Available | 653 | Open in IMG/M |
| Ga0130084_1106627 | Not Available | 535 | Open in IMG/M |
| Ga0130084_1121029 | Not Available | 781 | Open in IMG/M |
| Ga0130084_1121750 | Not Available | 780 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0130084_1016000 | Ga0130084_10160001 | F018518 | MNLPLPLELTEPVALADDLNSQVRAQMCSCTSSYAQCKTVGFLGAVQVDLSDVVVDDVIA |
| Ga0130084_1040135 | Ga0130084_10401352 | F035908 | MASAVPAWWSNPPAKLRFGLVLRNWHDGAICASREAAVKLGNILKWVLLAFIVWWVIEAPTNAAHLVHNIGTFLSSAATGLSHFVASV* |
| Ga0130084_1052310 | Ga0130084_10523102 | F099083 | GKGQGATPPPPFPTILGVWSHDERNVLIKGKWHTMILDHGRIVKSAPGQVTLREPDGTMATIPLSVKTRVAPLRFADTPPAFRRGFWAITMRIDDGAAVRLRLMLRP* |
| Ga0130084_1066261 | Ga0130084_10662611 | F001111 | FGIFDPQFGDWEPKVYIHLARARADSEILSGQILDRVLYFTLLQDPHVYKIDLAVRLYRGNFTTPNNTMLVGNPVTNELYGYSPSNIGIWKFNNFVSGNRTVIAKIDLSGVVPFPSSTINPIDNTMWVCLWGTANDAWLKVDLKKTSNNLAWASTKKTDGLFDFNPYTIT |
| Ga0130084_1066626 | Ga0130084_10666261 | F001256 | TYLALAQNDNMTQEFGEMKKIMYPVMGMVFGVIWIALAFIGARLPLDIILIVVGLIDALFGIFLIFLPVTTFLGLFYVAVGAFTIAVCRHSWGGDRGIDFLLALTIIIFLLTGGLTFIAYDWGLGSDYVISRISSYTYLSNCDNDMNIYRAPGDGKSTRCHNWAFFTAFCVFLLFLVQPIALIAAAFKRVGRHHDTTVVVNEKHQAE |
| Ga0130084_1074314 | Ga0130084_10743141 | F003556 | MAGKLLSAAYEHRHIASLRELLLSTAEQLSSTPFLDMRNQAMAYKYTAEELTTMTTSAPTIDPDYLGSFLQSVYGVWEQELVDCYISVCDGILGFQRVNGRSGKNNLHIAPKIPRALWDTKYESIVAVDVSL* |
| Ga0130084_1078301 | Ga0130084_10783011 | F000360 | FHLESESDLSMKSLESRGHTRLVIRLDKFRTELKNMKFFYKKKTFPELMDNGVVSFRIGGDGARLILVFNVEKKIGDAQPHLTEGYADFHIRQMDIDFDKDTLTHDVLVPMITNLSKQDIQNEIEKVVEKSLTNVIQKLGDQLSQTLSQVNRPFLNGLETAKETLKKSEMAQVYTNRREKLME* |
| Ga0130084_1086636 | Ga0130084_10866361 | F022569 | YNNKINNKKTKNMSSTIASTNVSVKEVAKEQLEKERERQLSGEQQSFKLREVQDLAQQLRVFLTEGQLPGPEVLSPVLLKAEELLVKITLRVDLEPETRQVIEDIASLVVTAKQMDRNKGIADRLQRIAEESQKAIETMRRSGVPSEAKEASKETLDFINNWRPVFQLLSRSRDFRQLFVDSLRIAKRVLSRQAKPIVDDAKERFIEGQSATTIAQTAKVEIKKRARKKYKFPMRKKTLF |
| Ga0130084_1088507 | Ga0130084_10885071 | F091155 | KMMKLVLALVCIVAIVAAQTPAKPKWPAKFSASVGVTGWPDHRHHFFRIFWDANQNKDRIDGIVHWQEEPYFATHIFDHTQKKEYAIYYQRETEVCFTRPLNRTMPKPNFNNVKYIGQAIIDYQPVYHWIESDPEKRFTLQYYDTQDTRVPLRIDFDDHRDRRAITQRFWEFDQCNQDPNLFT |
| Ga0130084_1097002 | Ga0130084_10970021 | F083540 | MLSPKMMFSPRSYRKNLNKHQMLLDEEHHSDLVELQQPAFNFANSIVEKSLDLLEYRVDFKGSAFKDCAYMRDIHDNKILKAKTATWSLDHKFKVTNLQQHDVWGTACCKLGIESCKYLIYFRDIEKAWFRKTMCKNRQYYYEVEFMDFRPNKWTIEAPALHRMVIKRDDGIVATLNRGCFEIHEFLSTEDTFVVQCIVLLFAQAFIDGVCVP* |
| Ga0130084_1100654 | Ga0130084_11006541 | F018518 | MNLPLPLELTEPVLLVDDLNSQVRAQMCSHTTSYQKCKTFNALGLVQVDVSDVQVDDVIA |
| Ga0130084_1100654 | Ga0130084_11006542 | F018518 | MSLPLPLELTKPVLLETDLNSEIKAQMCSGTRSSQCSGSLNTLGIVQVDATDVQVDDAIA |
| Ga0130084_1101195 | Ga0130084_11011951 | F091155 | LLLALVCVLAIVAAQAPPKPKWPQRFSASVSVTGWPDHRHHFFRIFYDSVQNKDRIDGIVHWQEEPYFATHIFDHTQKKEYAIYYQRETEVCFTRPLNRTMPKPNFNNVKYIGQAIIDYQPVYHWIESDPEKRFTLQYYDTQDTRVPLRIDFDDHRDRRAITQRFWEFDQCNQDPNLFT |
| Ga0130084_1105356 | Ga0130084_11053561 | F009870 | MNKNHDKHNKGVHPAFHMNGHGYPASLKKLVIVLLAIDFFTLLVSILAFAFTIAYMAKEGEIDYGCSNGYYPTDWLSASFGLTIISEITTIVAMILLMIIWLVRKKSMSIIYRFRLNRWLHIFLVFSRIALLIALLGLLKKHEHFWCYRSTGLWVIVFDAITALSIMQVIGILLWFILRFVIRAIYKAWYKPRPTQTTTVPT |
| Ga0130084_1106627 | Ga0130084_11066271 | F020944 | QGTGYIDKQWGTVNWNQDYDGWYWSTGHYGNYTVDMFVLPTSAAFNHQQTEDTYLAKGNGPSKVLVETMKGVTAHASGGNITAPGGVHTYPKILTLQWKNGTNSATLTLTNPSIITAATPVINTNATMYGYPQYMRLEGKGTLNVQWNGSNETASAPAIWEVSYAH* |
| Ga0130084_1121029 | Ga0130084_11210291 | F001011 | SDLSFVDSQGKLQVDTDMLSKLQTSFLPVLVDALKYIPVPKIYSNDHEREFWLDNLVLCSYDIMPENLRFYFETSSDVSMRDLEVHSHTYLVIQLNKFLTELKDIEFFYRKKSFPGFEDHGKVNFRIGGQGAKLTFTFAIDQNPEDAIPRIRKGYANFDISDLSIDFDKSTLRHPTMVPLLTQMFKIQIRHEIERRVEQNLTGFLQKLGDMMTRTLTEVNRPFLTGIEMAKKAVKSSQISQVYEKRRELLE* |
| Ga0130084_1121750 | Ga0130084_11217501 | F000654 | DQLNKVMGDDLTKVMDSIQGVKSRNEKYSFDLGQRGIKPVLDFMDLTKLSENDPNLSFLFQGPLSGLEEFFRGNTFITYKYLKAHALLLELGKLFQVIEKAANCAKQGGTLLVYGVANAQLNALLDSTKSMINAIRDEFTAVCKIAECAFEKLVYENKATVERSKWMGHFQHVFPASNMINESVKEVLHDVADIKATANAMTLYERFQKAQNDTADFLSSAEGFSQRTAAVLGQEYKKPEIKEDDLKKGSIDNTEALFA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |