NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009721

3300009721: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_174_18m (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300009721 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110190 | Gp0141764 | Ga0123358
Sample NameMarine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_174_18m (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size4426787
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral2
Not Available3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationLouisana Shelf, Hypoxic Zone, Gulf of Mexico
CoordinatesLat. (o)28.8679Long. (o)-90.4764Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001926Metagenome / Metatranscriptome616Y
F006550Metagenome / Metatranscriptome370N
F021393Metagenome / Metatranscriptome219N
F063612Metatranscriptome129Y
F072433Metagenome / Metatranscriptome121Y
F088984Metagenome / Metatranscriptome109Y
F092078Metagenome / Metatranscriptome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0123358_10376All Organisms → Viruses → Predicted Viral1928Open in IMG/M
Ga0123358_10880Not Available1848Open in IMG/M
Ga0123358_10933Not Available960Open in IMG/M
Ga0123358_14387All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1315Open in IMG/M
Ga0123358_14544Not Available847Open in IMG/M
Ga0123358_17489All Organisms → Viruses → Predicted Viral2271Open in IMG/M
Ga0123358_18665All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium579Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0123358_10376Ga0123358_103763F006550MAKVFNTKKADYNGMQLWLNPVDKTVYATEGAPTHSFAEAGGYAIYDFNKHFTNQKLAKDNFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVIGLADSSLTAKAAAGAWDTFTANTDHSDNSPLLDLGVAQLLIEGSGVGGKLSRVGMHPLDFAKYMSNTFIRGVASTKPSEVTFEPGTRELPGFPNAGLVLDNSIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLAALIQSETGRQLTGCTTPTNWT*
Ga0123358_10880Ga0123358_108802F021393EEINSETQVDTVEKSADTLVETEKSFQETVKSGIDTLTEVVQSIAESQLASTQAIEGLTDRVKALETPTDLPLSPKGTVAGDDVGAKVTVPDTYQSNSVQAGLDDDRSGDKKPSSDKGGLKMQQKADDTELVEKSQHTFTTETPRPNAALETVEKSHVDSSQILEDARAGGYDGLSNVAKGILTGKYYTPSPDEVGVY*
Ga0123358_10933Ga0123358_109331F063612ALRSVARGSPEDEATSVVEEAGLKIPGREMASKEVGHSSVL*
Ga0123358_13558Ga0123358_135581F092078NGFEDGKLNPNLSQVWLSKYGIRIGDAAQTNPRIGGKDLRETVSVPNTLSALKIADEILEGAEPWSDWKQYFRMIDMEAPKVNVPITKYTDTVGGAVGDQKGIEIYAEAGGMPPSIGGKVETVELDTSGTNNSYRGTLSVNRNDVKDNNFLSVEQSLKNAGNEFYYMVGEKLIRNLVNDTSVPTDTKANLDLATPVQSEFEALINVIRGIFPGTQ
Ga0123358_14387Ga0123358_143872F001926VRHEDTPETNNPKIRFAVLEGDKLMKEVLNGGYNVHPVPPPNSETKERITRRYERKRIKIEKLFTLGYTTSGDP*
Ga0123358_14544Ga0123358_145441F088984MRAWWANVTVTPEANKTPVFNSGIEKGLIGSIPAGGQVQPISGVGANLLWKNAQKNAKKKQTSERINKTIPIRMPLTTAELWNP*
Ga0123358_17489Ga0123358_174893F006550MASKVFNSKKADYNGMQLWLNPVDKTVYATEGAPKHSFAEAGGYAIYDFNKHFQNQKMAKDNFGNGAYSHDAFVDSEFKALAEDYVSDVKAGGRQRMAALRSSTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYSRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVALADASLTAKAATGVWDTFVSGADRSTNSPLNDLGIAKLLIEGSGVGGKMDRVGMHPLDFAKYMSNTFIRGVASTKPAEVSFEPGTRELPGFPEAGLVLDNAIRQGDVYCVDVSKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLAAVIQSETGRQLTGVSTPSDWT*
Ga0123358_18665Ga0123358_186651F072433MISKKIVINLAKKDDIFHLEPLGDIHVGHAGFNEDLYVDRVNAIAKADDRFTIFMGDQLDAITVFDKRFNPDMSIEHDV
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