| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300009718 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110190 | Gp0141787 | Ga0123381 |
| Sample Name | Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_248_2m (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 4140513 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Louisana Shelf, Hypoxic Zone, Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 28.8679 | Long. (o) | -90.4764 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000075 | Metagenome / Metatranscriptome | 2622 | Y |
| F001926 | Metagenome / Metatranscriptome | 616 | Y |
| F005667 | Metatranscriptome | 393 | Y |
| F024715 | Metatranscriptome | 204 | Y |
| F028388 | Metatranscriptome | 191 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0123381_12352 | All Organisms → cellular organisms → Eukaryota | 670 | Open in IMG/M |
| Ga0123381_12995 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium | 693 | Open in IMG/M |
| Ga0123381_15322 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum | 1392 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0123381_10408 | Ga0123381_104081 | F028388 | AGYNIFDDLLNDVLKPAIKHAIENLIPTIGKHLGDLADKLKPAEYLSITDIMEAAQQLKDIFNQIKAKIESGEVQDNVIDFLNKIKAVVEAKIAAATPAVKAILEKVDAAVKTVIEKAKAHVESGKGLLADLLETIIAKISELKDNIAGYNIFDDLLNDVLKPAIKHAIQNLIPTISKHLGDLADKLKPAEYLSITDIMEAAQ |
| Ga0123381_12352 | Ga0123381_123521 | F024715 | QSLFACLKPSAEVPKTGIMSALSYSWNVRGTLNGDFMSASGTTAVNEGIGEVHGTAGEGAPFNHSTWIWGGLGHYGLAWLKGGHKVNPTEKYPYHMTRHWWGEDGAHIWSSHTITGAEGAWAGDIACVAEYFVPGGAILGGYVRGQYPSHWVATKRSDKEVDVHGIVTLKLENGGTYTAHVHEYMKFWEPCVTINRHYWKLEYLEAEYYPTHWYHKEKAVAD |
| Ga0123381_12995 | Ga0123381_129951 | F001926 | VRHEEIPEINNPKTRFPVLEGDKLKKEVLNGGYNVHPVPPPNSEIKERITRRYERKRIKIEKLLTLGYTTSGDP* |
| Ga0123381_15322 | Ga0123381_153221 | F005667 | MADMVPEVGTPQRQRWAAKGVVAGCIGLVVLFAVAQSPFAPAAAKPRQLSQIVVTPPREECAKTTDSSCYAQKCCQTTGYTCYLVSEGKAKCMKSCTAGVDGTCLARVVTADATKSDVTLSSTNLFCFAVYMQDTGSTKKSYELELLRTNLFLGSHIFGCEAYKVYSDVSTWLSPGDVDTDMVTELPGAPFHFAKRKETGTWINSNIFLAVWKKIEEQGLWSDKDWTVKVDADAVFLPSRLRSKLLTQEVTSNGIYMENCKYVNFGFFGNLEVISRKAVATYLASLDDCKTSLNYLGKEKDYGNEPWGEDLFAQRCMDLHGVDKVSVFDLTTDGMCEAFRPEGQKKNKKWTPDCATTTTAGMHPFKNPKVFFDCLKATQR* |
| Ga0123381_15474 | Ga0123381_154741 | F000075 | KFAAALIATVAANRYESMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |