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Sample 3300009557
3300009557: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 8m depth; RNA IDBA-UD
Overview
| Basic Information |
| IMG/M Taxon OID | 3300009557 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0116874 | Gp0147224 | Ga0130021 |
| Sample Name | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 8m depth; RNA IDBA-UD |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Marine Biological Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 17718468 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 2 |
| All Organisms → cellular organisms → Eukaryota → Cryptophyceae | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
| Location Information |
| Location | Siders Pond, Falmouth, Massachusetts |
| Coordinates | Lat. (o) | 41.548517 | Long. (o) | -70.622961 | Alt. (m) | N/A | Depth (m) | 8 |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F025879 | Metagenome / Metatranscriptome | 200 | Y |
| F026478 | Metagenome / Metatranscriptome | 197 | Y |
| F069988 | Metagenome / Metatranscriptome | 123 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0130021_101541 | Ga0130021_1015412 | F025879 | YKGYPDFLKLMREFRIQRTDFDVWIPQLTGKSPESWIDNTKVPKHEYYTKLQYCKVGVQMRQSNYGWSVSGTDCMMNGTPMIFHDSLCYREIDPSGLFFKYKKDFFNLLNSFLDDDEFRIKHELRSIERAKELSSNEANMIKQLHKKLN* |
| Ga0130021_103797 | Ga0130021_1037971 | F069988 | VIYLKNERWFELPKSKDIDEPKVKPKQRINPYAA* |
| Ga0130021_108268 | Ga0130021_1082681 | F026478 | LPLLLALAFCVLLGAAAQKPKRKTVSITDPDVLKAKEFALKEIIKLTDSYRDMKVNKILKAETARSAFADGTNYFLKLELECVSICAAPLSPASTCRRGKYKGGNEVIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFADD |
