NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300009517

3300009517: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/28/2013_ DNA (Illumina Assembly)



Overview

Basic Information
IMG/M Taxon OID3300009517 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0055735 | Gp0103143 | Ga0102832
Sample NameWastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/28/2013_ DNA (Illumina Assembly)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size380930862
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peritrichia → Sessilida → Vaginicolidae → Thuricola → Thuricola similis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
TypeEngineered
TaxonomyEngineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMadison, Wisconsin, USA
CoordinatesLat. (o)43.076217Long. (o)-89.411742Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000845Metagenome / Metatranscriptome863Y
F001602Metagenome / Metatranscriptome664Y
F007590Metagenome / Metatranscriptome348Y
F007648Metagenome347Y
F018045Metagenome / Metatranscriptome237Y
F023924Metagenome / Metatranscriptome208Y
F035663Metagenome / Metatranscriptome171Y
F091427Metagenome / Metatranscriptome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0102832_1000792All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peritrichia → Sessilida → Vaginicolidae → Thuricola → Thuricola similis35296Open in IMG/M
Ga0102832_1003533All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi8290Open in IMG/M
Ga0102832_1008726All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia4066Open in IMG/M
Ga0102832_1012239All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium3152Open in IMG/M
Ga0102832_1014019All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2839Open in IMG/M
Ga0102832_1023551All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1888Open in IMG/M
Ga0102832_1025950All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus1747Open in IMG/M
Ga0102832_1049653All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium1041Open in IMG/M
Ga0102832_1059738All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium900Open in IMG/M
Ga0102832_1069803All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida796Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0102832_1000792Ga0102832_100079234F091427MLVVGVYFAGISTTISITNLLVTRRTLTMPGMRNRRIIIPFISITVLLMLRALAVITPVLGSAMLMLILDRH*
Ga0102832_1003533Ga0102832_100353311F007648MCTPHMTIQHTPEQEIWVMTTEGANITGYNSRYLQQLAKKNAQLPDNERFIKVRMRSNRHELWLPDLLHYIDEIGYGPHQNKK*
Ga0102832_1008726Ga0102832_10087265F007590LLEQKESWADRVEWEVIKTATGWRVVAWRIEHPNAKGPRRYLPWGYSEIELDGRMTTTDYRRKG*
Ga0102832_1012239Ga0102832_10122396F007648MAVHITPEQEIWVMTPEGAELTGYSREYLERLAYKNLRLPDDERLIKTRKRVGRYEMWLPDLLRYIDEIGYGPHQNKK*
Ga0102832_1014019Ga0102832_10140193F018045MQRIEELPAKEQEELFILLTKKVVGGRGTNAKPWLGKKLSFEEACEVVFRENRELLGDLAK*
Ga0102832_1023551Ga0102832_10235511F000845MKNSDVPNSQHSDSSRPLQWGSVFSRWLQGKRISYFTIPLLVMATIVEFVILATGWKYQQAACLPQGMGVTFFGIGPIGATILAVELLKLPLAIWTASRFGWQKKFMLVIGLPLICILTFQLVKDMAVYEMGAAMKPASELLEKASAEETKIAQLNAQLGAIEGKKTDRESKLAEFAAKKAKAKAEMEEELKRTDEARKDAISLTEYQ
Ga0102832_1025950Ga0102832_10259502F023924MLYARCSTCGYTAALTCSGAFMPHPPVPVTRTGAGATCPMCGPLPPIFTCPSFHTQYLSLPGSSWVPQPGYPCAPVVQAQPGASPESLAKSFVTAAGQAVGSGLLDAAFGGNR*
Ga0102832_1049653Ga0102832_10496531F007648MARETTPDQEIWVFTSEGAALTQYSREYLEKLAYKNWRLPENERVIQTRKRAGRYELWLPDLLRYKDEIGNGPLNIPKK*
Ga0102832_1059738Ga0102832_10597382F035663VHDAVGTLTFPGCDQDDMFELMDRVETELSAPHPNAQVIGTFLNSIARSLRNQPEAREACLRIEDVMERTGLPSTWQTGI*
Ga0102832_1069803Ga0102832_10698031F001602MKLNKLVIGVSCLVALLAVVASLKTESSTQCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPRCDWKCHKPACPKPKCELVCENPNCVPKVECCPCAMGAPRVSTPFPFFKETEGNQGCCGCKNNQARLLSDIDARTRTSRTINDFGTHVVTSENSERIDNFARPKQIGDSYFEGNGKAV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.