NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009391

3300009391: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_1 SPAdes



Overview

Basic Information
IMG/M Taxon OID3300009391 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118143 | Gp0131537 | Ga0116591
Sample NameMicrobial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_1 SPAdes
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Liverpool
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size156680471
Sequencing Scaffolds13
Novel Protein Genes15
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_91
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Predicted Viral3
Not Available4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales → Candidatus Methanomethylicaceae → Candidatus Methanosuratincola → unclassified Candidatus Methanosuratincola → Candidatus Methanosuratincola sp.1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)estuarine biome → estuary → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationUnited Kingdom
CoordinatesLat. (o)54.9632021Long. (o)-1.6348029Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021528Metagenome / Metatranscriptome218N
F030418Metagenome185Y
F037787Metagenome167Y
F040945Metagenome / Metatranscriptome161N
F042655Metagenome158Y
F051104Metagenome / Metatranscriptome144Y
F056707Metagenome137Y
F061655Metagenome / Metatranscriptome131Y
F069750Metagenome / Metatranscriptome123N
F077264Metagenome / Metatranscriptome117Y
F079177Metagenome / Metatranscriptome116Y
F104571Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0116591_1001093All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_95199Open in IMG/M
Ga0116591_1001519All Organisms → cellular organisms → Bacteria4323Open in IMG/M
Ga0116591_1004129All Organisms → Viruses → Predicted Viral2404Open in IMG/M
Ga0116591_1004156Not Available2396Open in IMG/M
Ga0116591_1004628All Organisms → Viruses → Predicted Viral2253Open in IMG/M
Ga0116591_1010024All Organisms → Viruses → Predicted Viral1501Open in IMG/M
Ga0116591_1013698All Organisms → cellular organisms → Bacteria1279Open in IMG/M
Ga0116591_1023640All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium975Open in IMG/M
Ga0116591_1036282All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales → Candidatus Methanomethylicaceae → Candidatus Methanosuratincola → unclassified Candidatus Methanosuratincola → Candidatus Methanosuratincola sp.797Open in IMG/M
Ga0116591_1040103Not Available761Open in IMG/M
Ga0116591_1070668Not Available588Open in IMG/M
Ga0116591_1083941All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon541Open in IMG/M
Ga0116591_1096585Not Available504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0116591_1001093Ga0116591_10010932F077264MAYGKIWNLRADSTWIEAVKVQAIEAGRDSPGAFVRDLVWSLTKNPTIKKQIFEIMQGVRYGQSG*
Ga0116591_1001519Ga0116591_10015191F061655MIDTLKLMLNEFEIADDSEIRVQPASYELGTGSKVEYPLFQTPSHGAHYGSKAYLNTDNWNLTLKPLAGGRATGAFLQLSVPKNYYGSNFYSV
Ga0116591_1001519Ga0116591_10015197F021528MIDTLKLMLNEYEITDDSEIRVQPASYELGTGSKVEYPLFQTPSHGSFYGSKAYLNTDNWNLTLKPLAGGRATGAFLQLSVPKNYYGSNFYSVGEQGTQAVLNKVEGELKERGVHTSLIEADMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNIETTNLPNTMRFEHRLLNKQKIQNVYGFGKVAELFKGGYEVVKEKQVESWESSLFNFTAEELVLIGSKQLEQEMKRFKEKSPSGWFSKFLKAYGAYYLASFAGKEAVIEALKNAEAERTMIWRAVQKFEEAERELLILKQEEGSKKTLGALYEELRRKVCLN*
Ga0116591_1004129Ga0116591_10041296F104571ETNEHNLFRKDNGKWVTGAKAYVNTGDYQLTIKPIISNGNRNGKVLLFLQTSLPKIIHGENFQALNNDETVQAIDAIAGDLQDRGVGVNLQECKTSRIDVFRTAIADNPFSSYAPVFRLLSAKRSHTTDYGTTFTWANTQREICVYDKGTEMRNRGVKSSALPTNAIRFEYRLKTSRVCKNETGAGNVRELVNNLDNLQGVYRQALENSIFSLDAQALATVTANELENGLRVYSARYGGAYVNRFFRDFGAYVLGRLTGVETVKSVLSSVLDDRYKLWRQSKAFDEYRMNFEMARGGLGDNTLKDFYLELKDKILPDSRCETGDLMTV*
Ga0116591_1004156Ga0116591_10041562F030418MGLFDSIGTFIDRAIPIGLGVATGGPLGGVTAAFGTEQQKSRQKRLEKATSMYQNDPGLSQGFTGNMSIQPTNRDAGFFGDLGSTIGSFGSNVGQFFNDISPLTSLFGGGRSLPRTNSGTAISIDTGRPQETSQSGEILGASLGLAPALFQGARGLLRTPGGQTALGFGAGALGAAFAGNGSSAPRITRKMKSDVRRIYMMAGMDPAATAQILNNLGTYPRIDFNASVVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKNVADMYNSVCKPKPRSPRPRAAPKAVQLIKN*
Ga0116591_1004628Ga0116591_10046281F104571MIDTLKVFTDDFKIRENAGLFVQPATVNYETGETKEYNLFRGGNGKWVTGAKAYVNTGNYQLTIKPIVGNGNGKVLLFLQTSLPKIIHGENFQALNNDETVQAIDVIADDLQDRGVGVNLQECKTSRIDVFRTAIADNPFSSYAPVFRLLSAKRSHTTDYGTTFTWANTQREICVYDKAVEMQNRGVKSSALPTNAIRFEYRLKTSRVCKNETGAGNVRELVNNLDDLQDVYRQALENSIFSLDAQALATVTANELENGLRAYSARYGGAFVNRFFRDFGAYVLARLTGVETVKSVLSSVLDDRYKLWRQSKAFDEYRMNFEMAR
Ga0116591_1010024Ga0116591_10100241F077264MALTKIWNLRADSAWIELVKIQANEAGRDNPGAYVRDLVCALSQNPTIKNRIFEAMQGACNGQP*
Ga0116591_1013698Ga0116591_10136981F069750LVIGEFPLQENSFFVEGEKFLIKERKNQKGKKTQYYLIRLQPFQYVSSLFPTGEEESFTFDYEQKIYRLEK
Ga0116591_1013698Ga0116591_10136984F051104IAEKGVFKLRIAEEIEKEAKLSQELIQEGFWHAFRAGELIQEVKSMLNWKEEREEAVEGWLEDNCSQVELSVLKNCRKLFNGETVKVEATKREQ*
Ga0116591_1023640Ga0116591_10236402F061655MYNKAVLLQDLQHMEISMIDTLKLMLNDYEISEESEIRLQPASYELGTGAKVEYPLFQTASHGNHYGSKAYLNTDNWNLTLKPLPGGRATGAFLQLSVPKNYYGSNFYSVGEQGTKAVLNKVEEELKEKGVHTSLDKADLSRVDTFKNIEPEEPFSSYYTLFS
Ga0116591_1036282Ga0116591_10362821F037787LKIYSDDPNLPYKTTKLKALYTRSEIDGLFAKWGVKDTYWRWDPDNNEVFVQFKIAEKIDDVPRQFSAKVEAPAIWDRKTRSKAESINWDISMRVMFWFIKSHLESAYLLQSSKTVAFLPYIATGDDSRTVKDLIPMLNQLQHLHALPKPVIIDQEPEAT*
Ga0116591_1040103Ga0116591_10401031F079177MNFTSKFIQAALAISFSKVEEIKIKRIKELLEIKSKIKEDPVVVEHWFDNEINKISNVMENNSSSTDTESLINKIK*
Ga0116591_1070668Ga0116591_10706681F042655PQEYMNFINKEIKKPKRLNTELLELWLERELDIENPGSYGNLPTDEGHVTVQALPDGNYKLTISNACFGMIKSHVQPEPHSRRKLTDEDILRCWLEIKIEEDETEHRVKVKELK*
Ga0116591_1083941Ga0116591_10839411F056707LNQKEIEAAVICMRIFLSGLALNFDADFHELEEVTKRALDTVLR*
Ga0116591_1096585Ga0116591_10965851F040945ENLLYALCVKYSSQPSGLIIYDDRLKANIIGEFSVDEFRRIYQTRKPIVRRQYSEVQDIDQISYRSLTHNTKIGDRYIPIVARIIPVTALPLLMGRDFRDDHAESPAQQKQVNELNHPRIYFFKRGKTSKPRLTLKQLERIHKKGNHPALMEMTQDITRLGHKIDKAM
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