Sample 3300009379

Overview

Basic Information
IMG/M Taxon OID	3300009379 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118797 \| Gp0139523 \| Ga0118737
Sample Name	Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 1 cmbsf
Sequencing Status	Permanent Draft
Sequencing Center	Oregon State University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	458512762
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacterales incertae sedis → Candidatus Desulfatibia → Candidatus Desulfatibia profunda	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	Baltimore Canyon, US Atlantic Margin
Coordinates	Lat. (^o)	38.05018333	Long. (^o)	-73.82193333	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F021303	Metagenome / Metatranscriptome	219	Y
F025922	Metagenome / Metatranscriptome	199	Y
F034978	Metagenome	173	Y
F036294	Metagenome / Metatranscriptome	170	Y
F037736	Metagenome / Metatranscriptome	167	Y
F056961	Metagenome	137	N
F061862	Metagenome	131	Y
F065254	Metagenome	128	Y
F088916	Metagenome / Metatranscriptome	109	Y
F101182	Metagenome	102	Y

Family

Category

Number of Sequences

3D Structure?

F021303

Metagenome / Metatranscriptome

219

F025922

Metagenome / Metatranscriptome

199

F034978

Metagenome

173

F036294

Metagenome / Metatranscriptome

170

F037736

Metagenome / Metatranscriptome

167

F056961

Metagenome

137

F061862

Metagenome

131

F065254

Metagenome

128

F088916

Metagenome / Metatranscriptome

109

F101182

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0118737_1005154	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	2081	Open in IMG/M
Ga0118737_1024300	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1028	Open in IMG/M
Ga0118737_1057520	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
Ga0118737_1058227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	715	Open in IMG/M
Ga0118737_1068250	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacterales incertae sedis → Candidatus Desulfatibia → Candidatus Desulfatibia profunda	674	Open in IMG/M
Ga0118737_1098007	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	591	Open in IMG/M
Ga0118737_1105778	Not Available	574	Open in IMG/M
Ga0118737_1108859	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	568	Open in IMG/M
Ga0118737_1135660	Not Available	521	Open in IMG/M
Ga0118737_1138120	Not Available	518	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0118737_1005154

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales

2081

Open in IMG/M

Ga0118737_1024300

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

1028

Open in IMG/M

Ga0118737_1057520

All Organisms → cellular organisms → Bacteria

719

Open in IMG/M

Ga0118737_1058227

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

715

Open in IMG/M

Ga0118737_1068250

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacterales incertae sedis → Candidatus Desulfatibia → Candidatus Desulfatibia profunda

674

Open in IMG/M

Ga0118737_1098007

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont

591

Open in IMG/M

Ga0118737_1105778

Not Available

574

Open in IMG/M

Ga0118737_1108859

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales

568

Open in IMG/M

Ga0118737_1135660

Not Available

521

Open in IMG/M

Ga0118737_1138120

Not Available

518

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0118737_1005154	Ga0118737_10051541	F036294	MDRGPTDEAVVGVKSVADEDAVTYLRVKLPESDREVGA*
Ga0118737_1024300	Ga0118737_10243002	F065254	LWNAPVALNKGSEQAEKASVATETLLWGCPITNFKATLPYNRMGQLFAAFKKRLHDPALERFKGYN*
Ga0118737_1057520	Ga0118737_10575201	F088916	MPSTILDNVKGRDLPKIWADKIDIISDKTYTVIIQPQEERQSLQKIMSQISRNAKNRGMTPDILEDILGEKVKHIL*
Ga0118737_1058227	Ga0118737_10582271	F021303	MTDQTISTDVPGLQANVLDHSSEFVELVFREAPEEYRRLMVSERFRRELKQDNRFNHGKLFAYAELVVFRREFRQRFPDSSPAACINAFSKLFLKNDISITNLVDFVEGGDDRRQMLLNKG*
Ga0118737_1068250	Ga0118737_10682502	F101182	MNSYEENLQYERKMDRISEQIEELMLDAMITALKKIKDRNLFYSDVESGSQNDPYPF*
Ga0118737_1098007	Ga0118737_10980071	F037736	VPCRVQLDGLQILWLLANPLWTHGIGESGSKTITGWLLMGAAAANHIWWLNTNPFTGLLLHLNSYRIRHLPFGFLTAS*
Ga0118737_1105778	Ga0118737_11057781	F034978	MNLKINATKDQIKELKSSILWADITNELNNWKEGFNAEMMSIVDTSADSNPSTASVLLHMGDLNGRQKAVDYMVGILDVFLSIQETNKTDEIDEIEEEEINNRK*
Ga0118737_1108859	Ga0118737_11088591	F056961	IYNKDKAKRLPHSTFEVERSMFDVQIVASEITTKPSYHVEITYTGQEF*
Ga0118737_1135660	Ga0118737_11356601	F025922	VWVNGEIMYRVQSLGTTTSFTSEDVFELGQLDIIDVVDDVPAVAVTLNTNDFGDVRTLATLAQLPPAKAAMTALADNTTGNLVSGVDYMHGVCIADFAVTCGNLTGVTLWAPVQEECDLGTLANNIDQTLFLDEVYVNSLEFSYTTGANATENYGAETDNKMWLANDGRFVTQ
Ga0118737_1138120	Ga0118737_11381202	F061862	MKGAFKMQDEETMWYENYEPVQEYLDSEFSKKSTVAEKDPKTVRVSWLEIMKKSFHIK*

Scaffold ID

Protein ID

Family

Sequence

Ga0118737_1005154

Ga0118737_10051541

F036294

MDRGPTDEAVVGVKSVADEDAVTYLRVKLPESDREVGA*

Ga0118737_1024300

Ga0118737_10243002

F065254

LWNAPVALNKGSEQAEKASVATETLLWGCPITNFKATLPYNRMGQLFAAFKKRLHDPALERFKGYN*

Ga0118737_1057520

Ga0118737_10575201

F088916

MPSTILDNVKGRDLPKIWADKIDIISDKTYTVIIQPQEERQSLQKIMSQISRNAKNRGMTPDILEDILGEKVKHIL*

Ga0118737_1058227

Ga0118737_10582271

F021303

MTDQTISTDVPGLQANVLDHSSEFVELVFREAPEEYRRLMVSERFRRELKQDNRFNHGKLFAYAELVVFRREFRQRFPDSSPAACINAFSKLFLKNDISITNLVDFVEGGDDRRQMLLNKG*

Ga0118737_1068250

Ga0118737_10682502

F101182

MNSYEENLQYERKMDRISEQIEELMLDAMITALKKIKDRNLFYSDVESGSQNDPYPF*

Ga0118737_1098007

Ga0118737_10980071

F037736

VPCRVQLDGLQILWLLANPLWTHGIGESGSKTITGWLLMGAAAANHIWWLNTNPFTGLLLHLNSYRIRHLPFGFLTAS*

Ga0118737_1105778

Ga0118737_11057781

F034978

MNLKINATKDQIKELKSSILWADITNELNNWKEGFNAEMMSIVDTSADSNPSTASVLLHMGDLNGRQKAVDYMVGILDVFLSIQETNKTDEIDEIEEEEINNRK*

Ga0118737_1108859

Ga0118737_11088591

F056961

IYNKDKAKRLPHSTFEVERSMFDVQIVASEITTKPSYHVEITYTGQEF*

Ga0118737_1135660

Ga0118737_11356601

F025922

VWVNGEIMYRVQSLGTTTSFTSEDVFELGQLDIIDVVDDVPAVAVTLNTNDFGDVRTLATLAQLPPAKAAMTALADNTTGNLVSGVDYMHGVCIADFAVTCGNLTGVTLWAPVQEECDLGTLANNIDQTLFLDEVYVNSLEFSYTTGANATENYGAETDNKMWLANDGRFVTQ

Ga0118737_1138120

Ga0118737_11381202

F061862

MKGAFKMQDEETMWYENYEPVQEYLDSEFSKKSTVAEKDPKTVRVSWLEIMKKSFHIK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009379: Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 1 cmbsf

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences