NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009348

3300009348: Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone2_total_RNA



Overview

Basic Information
IMG/M Taxon OID3300009348 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117975 | Gp0126375 | Ga0103786
Sample NameMicrobial communities of thrombolites from Highborne Cay, Bahamas - Zone2_total_RNA
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Florida
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size47559849
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
Not Available5
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities Of Thrombolites From Highborne Cay, Bahamas
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Microbial Mats → Microbial Mats → Microbial Communities Of Thrombolites From Highborne Cay, Bahamas

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → cay → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationHighborne Cay, Bahamas
CoordinatesLat. (o)24.72Long. (o)-76.82Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001679Metagenome / Metatranscriptome653Y
F003495Metagenome / Metatranscriptome483Y
F008361Metagenome / Metatranscriptome334Y
F030135Metagenome / Metatranscriptome186Y
F037503Metagenome / Metatranscriptome168Y
F047147Metagenome / Metatranscriptome150Y
F060086Metagenome / Metatranscriptome133Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103786_1002964All Organisms → cellular organisms → Bacteria1170Open in IMG/M
Ga0103786_1002965All Organisms → cellular organisms → Bacteria1170Open in IMG/M
Ga0103786_1003772All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1051Open in IMG/M
Ga0103786_1005740Not Available857Open in IMG/M
Ga0103786_1007140Not Available771Open in IMG/M
Ga0103786_1007351Not Available759Open in IMG/M
Ga0103786_1007822All Organisms → cellular organisms → Eukaryota735Open in IMG/M
Ga0103786_1012950Not Available566Open in IMG/M
Ga0103786_1014098All Organisms → cellular organisms → Eukaryota543Open in IMG/M
Ga0103786_1015383All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium521Open in IMG/M
Ga0103786_1015623Not Available516Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103786_1002698Ga0103786_10026981F047147VKLYPSIKYTIIVAVTEGLVREEQLLHDMCLLGAVTVEITQILTRAGIYIGLKYI*
Ga0103786_1002964Ga0103786_10029642F001679VWGMSRRQKAMKGVEDCDKPRGLVKRELIRGCLNDMH*
Ga0103786_1002965Ga0103786_10029652F001679VWGMSRRQKAMKGVEDCDKPRGLVKRELIRGCLNDM*
Ga0103786_1003772Ga0103786_10037722F003495MKENNEKKIKNGEEISKLTKAPPKDTAALDKRSVLAKVNSQGSGR*
Ga0103786_1005740Ga0103786_10057401F047147AVTEGLVREEQLLHDMCLLGAVTVEITQILTRAGIYYD*
Ga0103786_1007140Ga0103786_10071401F047147EGLVREEQLLHDMCLLGAVTVEITQILTRAGIYIGLKYI*
Ga0103786_1007351Ga0103786_10073511F030135PRIAPEGLKDREELATLSSFTDIWHSTFAGCQFPDAILPGWEAFDLVAGPPS*
Ga0103786_1007822Ga0103786_10078221F060086QEDPFELDSNLLLSSGRHGEDRKRQYNFLYDHETPLLDDLADLLH*
Ga0103786_1012950Ga0103786_10129501F030135PRIAPEGLKDREELATLSSFTDIWHSTFAGCQFPDAILPGWEAFDLVAGPLN*
Ga0103786_1014098Ga0103786_10140981F060086PFELDSNLLLSSGRHGEDCKRQYNYSKYTLYDHETPLLIDLADLLY*
Ga0103786_1015383Ga0103786_10153831F037503MHLGAASELSVIEVELLIRLGGFTAYQTLTNSECYDIFLGVRAWVLRSLSERERTQT
Ga0103786_1015623Ga0103786_10156231F008361TVLVNDVEELTNVELSEATKELEKATLAVENAETSKDRLDASLELKKATARLEAINYLS*
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