NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009345

3300009345: Anoxygenic and phototrophic microbial communities from Little Sippewissett salt marsh, Woods Hole, MA - SCQ2a longer assembly SCB2a_77



Overview

Basic Information
IMG/M Taxon OID3300009345 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0075607 | Gp0113222 | Ga0123253
Sample NameAnoxygenic and phototrophic microbial communities from Little Sippewissett salt marsh, Woods Hole, MA - SCQ2a longer assembly SCB2a_77
Sequencing StatusPermanent Draft
Sequencing CenterMarine Biological Laboratory
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size117281840
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSalt Marsh Microbial Communities From Little Sippewissett, Woods Hole, Ma That Are Anoxygenic And Photosynthetic
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Marine → Salt Marsh Microbial Communities From Little Sippewissett, Woods Hole, Ma That Are Anoxygenic And Photosynthetic

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationFalmouth, MA
CoordinatesLat. (o)41.5758508Long. (o)-70.635807Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086646Metagenome / Metatranscriptome110Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0123253_101298Not Available1809Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0123253_101298Ga0123253_1012983F086646MDFIFSIKNHYFEKGTTWVELDKIKQRCWFISVDIEDDETVPCYDTERELRISKGIAFKSVQILTIKTQETHPYWEAFLDMSYLHSTELRDVTFKDLPNESGIYMLNIWFDHDGENLNFGDNFKKLCEYRHKWDDGWVCSRCGVRKSDWLKADIKTTIR*

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