NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300009330

3300009330: Microbial communities of water from the North Atlantic ocean - ACM50



Overview

Basic Information
IMG/M Taxon OID3300009330 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117984 | Gp0126418 | Ga0103829
Sample NameMicrobial communities of water from the North Atlantic ocean - ACM50
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Georgia
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size30783527
Sequencing Scaffolds11
Novel Protein Genes15
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae1
All Organisms → Viruses1
Not Available3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → surface water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Pacific Ocean
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000075Metagenome / Metatranscriptome2622Y
F000237Metagenome / Metatranscriptome1498Y
F005505Metagenome / Metatranscriptome398Y
F005629Metagenome / Metatranscriptome394Y
F006845Metagenome / Metatranscriptome363Y
F009069Metagenome / Metatranscriptome323Y
F012117Metagenome / Metatranscriptome283N
F028825Metagenome / Metatranscriptome190N
F031080Metagenome / Metatranscriptome183Y
F031118Metagenome / Metatranscriptome183N
F033052Metagenome / Metatranscriptome178Y
F063309Metagenome / Metatranscriptome129N
F064740Metagenome / Metatranscriptome128Y
F082767Metagenome / Metatranscriptome113N
F093788Metagenome / Metatranscriptome106N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103829_100061All Organisms → Viruses → Predicted Viral2504Open in IMG/M
Ga0103829_101440All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium943Open in IMG/M
Ga0103829_101619All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae910Open in IMG/M
Ga0103829_101788All Organisms → Viruses885Open in IMG/M
Ga0103829_102733Not Available772Open in IMG/M
Ga0103829_103168All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage734Open in IMG/M
Ga0103829_103971All Organisms → cellular organisms → Bacteria682Open in IMG/M
Ga0103829_104983All Organisms → cellular organisms → Bacteria → Proteobacteria630Open in IMG/M
Ga0103829_107212All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata553Open in IMG/M
Ga0103829_107596Not Available542Open in IMG/M
Ga0103829_108237Not Available526Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103829_100061Ga0103829_1000611F064740MPLESAADFNSYVDTTTGHGVTATFFEVQSALWDARNGLIDTWYDIDSGDAYSVNIIIDQEYFSIEGGTVPVDGFQPRAIMKSSDAPYI
Ga0103829_101440Ga0103829_1014402F012117MENNMVDILGGMTNPNSESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPATFKSGWGRYTRADGFEYQWDEKFGVVSSKPAEDFKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNSLLATFWNQMDASSTSLPVVKFEGSKPIQVGMGNSSELTFSFAKFAPRSPEFIIPSWYLDQEAPVEDTFKSPNDGLSDKVAEMVNQNELTDDDIPF*
Ga0103829_101440Ga0103829_1014403F006845FEEYCRFAYDKITSACQFLGIYNDEDYESFKERCYTQLEADYLNSIEKTIH*
Ga0103829_101619Ga0103829_1016191F005629SFYIRRTWTDFVGRTVKVDHVGPYMESQEFAVGLQRQHDMRRQVPATEQITKWEWVDGVTAIADLVFD*
Ga0103829_101788Ga0103829_1017886F093788RDPLNLSITTMTEFNPRSYILTQLAYAEEQLMIADDMTSKLTWGNRCDALEAALADLEAA
Ga0103829_102558Ga0103829_1025581F028825MTGIALQEALESFTKLTDTLQECIKSHDIEGAMALAKERHDALVNLLEHADVDQSQRANCADTTLEHLRKEQLLAKSNSDQNRSDFIARKSAYRAYAPKAA*
Ga0103829_102699Ga0103829_1026991F000237F*FHYIVALGISLSATHLSDLTLTIIANIF*SIFNFIYKTYYIVFTNKHLNTDQLTRLMMFHYFTP*YYLYLVKLHVLFCHES*DSDSGENVYEDKSGSYVS*FYDAFLKEIQDA*Y*TLYVFVYFFIHHFDASTVNYHFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FVLLAALPIIYNLYNSNNSYLPIIPMQSSMLQTLFFILFMLSMYCTASMLPCGRYYYAPEGGYVGNP*VKFS
Ga0103829_102733Ga0103829_1027332F009069MLDPVGNLPFAIEAQRSRESIENHQAQQRVQVEHNRAHKLSKALERQQLDLMLSYDKFGASNSGLQPQGQIVDMEV*
Ga0103829_103168Ga0103829_1031681F033052FLKINSMEIINEIANILIFINATLFYIFVFGREIKALARLNKMEKILLRVGLSIPSMGALYNVLVGQYPPIPEIIINVGYASLWTWASIFHYNTFVKNGK*
Ga0103829_103971Ga0103829_1039712F031118VTQARCEALAEILAEAEKLKLYRLDGTTYCEKCDNLVVRIQAVLTDVNVEDLSADEIEIIKSIKEKVISEEVFAQSSSILRNPKEWLGTLNE*
Ga0103829_104983Ga0103829_1049831F063309EGFRALVVSSRGNSAVLLVLTGENTGDLLNTESLQNYEMDIVSEMQGRLPETRYFFQKSAAERNIKSIEYHKNELKEEIHRGDVSLWWSRARNLRKTEKTNERLDLVLEILLSEQMERRLVY*
Ga0103829_107212Ga0103829_1072121F005505YFFLHHFNGATVNFFFFER*NIAELDEIRFYGVAPH*YFRPLMGILVISPTHYEGLM*MGLFFVLLAFLPIFYNFYNVYHKHVSTIPMQNSLLQTTRFILFMMSLYCTASMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLAWIIHHLDLIDHYIFQFSQTLVRKCSSYGLRFERLNTKNLTS
Ga0103829_107596Ga0103829_1075961F082767AATVTDAVVAADEAVGQTAITIDDGSGGSATVSLSEGDIIYFGSATGSDDYYTVESQTGTVLTLKEPLRAAVANNATINPVDIASGDTGREQFFYDPSALALVTAVMPSLDSGSGSGVRRAAGFEPTNNVNYTLTVEETKSGADVLIEVLYGTKVFRPDLGGRYIRGNVSKA*
Ga0103829_108136Ga0103829_1081361F000075AAANQFDHMNEDELLVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103829_108237Ga0103829_1082372F031080MNDFFDIVDAPGEIYDIPEMQDLDDENKFDVNEYLN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.