| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300009323 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117984 | Gp0126434 | Ga0103845 |
| Sample Name | Microbial communities of water from the North Atlantic ocean - ACM32 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Georgia |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 24520825 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 10 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Tamkungvirus → Tamkungvirus ST4 | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 3 |
| Not Available | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → surface water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | North Pacific Ocean | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000155 | Metagenome / Metatranscriptome | 1877 | Y |
| F001583 | Metagenome / Metatranscriptome | 668 | Y |
| F005505 | Metagenome / Metatranscriptome | 398 | Y |
| F005629 | Metagenome / Metatranscriptome | 394 | Y |
| F033052 | Metagenome / Metatranscriptome | 178 | Y |
| F047447 | Metatranscriptome | 149 | Y |
| F056566 | Metagenome / Metatranscriptome | 137 | N |
| F074364 | Metagenome / Metatranscriptome | 119 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103845_100840 | All Organisms → Viruses → Predicted Viral | 1007 | Open in IMG/M |
| Ga0103845_102056 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 736 | Open in IMG/M |
| Ga0103845_102372 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Tamkungvirus → Tamkungvirus ST4 | 700 | Open in IMG/M |
| Ga0103845_103782 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 591 | Open in IMG/M |
| Ga0103845_103984 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 580 | Open in IMG/M |
| Ga0103845_105177 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 530 | Open in IMG/M |
| Ga0103845_105272 | Not Available | 526 | Open in IMG/M |
| Ga0103845_105349 | All Organisms → cellular organisms → Eukaryota → Sar | 523 | Open in IMG/M |
| Ga0103845_105784 | Not Available | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103845_100840 | Ga0103845_1008403 | F056566 | VIRLTIGLSRDGLNPITGTARVRWFNSPLQEYRHTHVSRRAILKMLWFSGDTSKGQWVNCHCLAS* |
| Ga0103845_102056 | Ga0103845_1020562 | F033052 | LKINSMEIINEIANILIFINATLFYIFVFGREIKALARLNKMEKILLRVGLSIPSMGALYNVLVGQYPPIPEIIINVGYASLWTWASIFHYNTFVKNGK* |
| Ga0103845_102372 | Ga0103845_1023721 | F005629 | MKKDIRNDSSSFYIRRTWTDFVGRTVKVDHVGPYMESQEFAVGLQRQHDMRRQVPATEQITKWEWVDGVTAIADLVFD* |
| Ga0103845_103782 | Ga0103845_1037821 | F005505 | LHHFNGGTVNYFFFER*NIAEMDEIRYYGVAPH*YFRPLMGMLIVCPTHYQGVF*LLLYLVLIASLPLFYNFYNTFNKHVPAIPMQNSLLQTTAFILFMMSMYCAASILPCGRYYYEPEGGYVGNP*IKFSFQYIYLYLG*ILHHLDVLDHHIFQFSQTFIRKCSSYSMRTNLLRKTNSSKKVNRKTFVK** |
| Ga0103845_103984 | Ga0103845_1039841 | F001583 | LMVLSYMHILKKIYLKNYVTSESDG*MLGGYAFF*FHYIIALGISLSASHLSDLTLTIITNIF*SVFNNIYKTYYIIFTNKHLNVDQLTRLMILHYFTPWYYLYLVKLHVLFCHES*DTDSGENIYEDKSGSYVS*FYDAFLKEIQDA*Y*TLYVFVYFFLHHFNGATINYFFFER*NISELDEVRFYGVAP |
| Ga0103845_105177 | Ga0103845_1051771 | F005505 | VQHHRYFRPLMGVLVITPTHYEGLM*FVL*LLLLAILPIIYNFYNGYTRYVNAIPMQNSLLQTTFFIVFMMCIYCSASMLPCGRYYYEPEGGYVGNP*IKFSYQYIYVYMY*ILHHLDIIDHHIFQFSQTYMRKCSSYANRTLS*RKSSSSRKTR* |
| Ga0103845_105272 | Ga0103845_1052721 | F074364 | VERVRGLIENVIGTARVNLDELERAEAAALEEFRTVSANLEATLRDLAALKVRLNDHVSDMSNCVLEEEVVMKTASSKVDRNTEMLETATKMCNTFKVEYEVATEGRNEERDLLRIIKTMAEKRMVRYRDANTESKYGDDYGAEY* |
| Ga0103845_105327 | Ga0103845_1053272 | F000155 | AVAAANRYESMNEDDLLVSLESTPSSAQASEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP* |
| Ga0103845_105349 | Ga0103845_1053491 | F047447 | DYCIVALNTNEYETSRKTKEKDELIALNDDLANIVSSLTNEVKGLESSIAEMRKQMKRAGEDRELENKAFMETVANQKATQNFLQSALNILKGFYDKASLVQKKADQKVAAGQAPPPGFKSYEKNAASGGVMGMMSGIINDAKAMEAEAIRGEEDAQKTYESFVKDTNMSIEMK |
| Ga0103845_105784 | Ga0103845_1057841 | F056566 | IVIRLTIGLSHDGLNPITGTARVRWFNSPLQEYRHTHVSRRAILKMLWFSGDTSKGQWVNCHCLAS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |