| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300009310 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117985 | Gp0126464 | Ga0103875 |
| Sample Name | Eukaryotic communities of water from the North Atlantic ocean - ACM9 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Georgia |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 6874772 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Eukaryotic Communities Of Water From Amazon River, Brazil And North Atlantic Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Surface Ocean Water → Eukaryotic Communities Of Water From Amazon River, Brazil And North Atlantic Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → surface water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | North Pacific Ocean | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000276 | Metatranscriptome | 1390 | Y |
| F007073 | Metagenome / Metatranscriptome | 358 | Y |
| F008117 | Metagenome / Metatranscriptome | 338 | Y |
| F014836 | Metagenome / Metatranscriptome | 259 | Y |
| F039594 | Metagenome / Metatranscriptome | 163 | Y |
| F040511 | Metatranscriptome | 161 | Y |
| F056539 | Metagenome / Metatranscriptome | 137 | Y |
| F088204 | Metatranscriptome | 109 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103875_100084 | Not Available | 851 | Open in IMG/M |
| Ga0103875_100145 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta | 752 | Open in IMG/M |
| Ga0103875_100344 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis | 599 | Open in IMG/M |
| Ga0103875_100496 | Not Available | 547 | Open in IMG/M |
| Ga0103875_100604 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 518 | Open in IMG/M |
| Ga0103875_100616 | Not Available | 516 | Open in IMG/M |
| Ga0103875_100667 | Not Available | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103875_100084 | Ga0103875_1000841 | F007073 | ANWHGTWTANNRYGGEMYACPVGNRLYGVYSNAGFFIGRITDRVVEGTWYEGGRGDRNDWQGSFRITISEDNQEFDGFYYRVTQDGYEIRWHETRLGAPFPSNPTHYQCLVPGDEPVLGGFFNNPGQGRDPAVYSLCKDEYDQIYGSFGAPDGFIEGWSVDSSTGFHGYKYDSNGRSGAYILRSVSDTLVKGFYWRGRLARENIQTSVPETLHRTSYTTTLNECERVGPGFLRRLRGPTNAAGALTMSMFVVFAAAAFALFI* |
| Ga0103875_100145 | Ga0103875_1001451 | F039594 | FDRPWMCDIEIPTKAAHPGDNAYFVSVNGKNATYSIAFWRGRENCHSFTGSGRNEGLDFCAGLVPYGTWRWDSYRNLDNEAECFFEELYQHFRVQPCYTGVTPECNATLQSFACHESFRRCDEFGFYTGTCRDSCEAVVYECANWFESVDLEHYNCTSNRYIDSHSATCTGNPTFSTIDPQTQNFFGNEPDLLLFKSSPSSSDSSSLNISLLLCVISTLFALLF* |
| Ga0103875_100344 | Ga0103875_1003441 | F000276 | RNKCVAGDNAYKCAVFFENLTPKRELTWVGALPDALKKATNQAEVRDILGADVTEESFSDLPTCDDKTANARCFAILDRQKSISLDSCDRNLINTRGSETVGDYLCGQVRRWLRRSDDFKANGIEGLRLPFYYSACNGEWTPISDGSEALYFDEDLCCNPQGKFYRCDGSQFNDSC* |
| Ga0103875_100377 | Ga0103875_1003771 | F056539 | LISCQLSLINPPGRGFSFGDSRHAPCGQSPTHTAERIAWEEGSVREIEVQILGAAGGGVVFDRYSCVLNGDAENPIEPVFPIQGALAVEIPDWDDQIYRLYVRLPSFRCTGDVTMQLVYNAENGQEFYQCQDIILTYSGASTLSMSIFAIVVAVAMMIL* |
| Ga0103875_100496 | Ga0103875_1004961 | F040511 | ESKCCISEPSSSSKLKFPPSGGAETLAPSQGTFWKEFTYKGEVDFNGVHYKGKAKYYLLSGVNEPVTDFWYFTDLDGKPVQQGEAGTGPTDQGYPVSIGHTICHDYEPSSLDSSAFDTSVFDIPEVCKTTTLTCAFP* |
| Ga0103875_100604 | Ga0103875_1006041 | F008117 | ALLDPGGAGMKVDSVSVRGMSGYMQRSMRLLEKPGSPTVTDNIRVMEAAREILYRPVKNGQESDEERVFALRTGPLRFEMFSRNSRDQMRTDWTAPRSVAISVFDATAAVARRM* |
| Ga0103875_100616 | Ga0103875_1006162 | F088204 | WRWDTEACKKQWKWGPWGEDLFMQKTMDDAEVLKKEDFTLTDTGTCPGMRPKSDKKNASYVPSCTDSGVYKFVAVHPMRTLPAWKDCYSAISR* |
| Ga0103875_100667 | Ga0103875_1006671 | F014836 | TITVDQERRVNELYVGPNRWDTTRLVIDEDLTIVYDDFPVISRAQGYRLPTGHVRLIIQGKGFGFVSEDLQVVARDFWENDDDANIEDMDPFVYDCEMATLTYRDAKIECNIAAANMMPYTLEVQVSANGFTTPWVQLSEHIR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |