NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008997

3300008997: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um, replicate b



Overview

Basic Information
IMG/M Taxon OID3300008997 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118094 | Gp0127931 | Ga0115662
Sample NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um, replicate b
Sequencing StatusPermanent Draft
Sequencing CenterGeorgia Genomics Facility
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size800879438
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal water bodycoastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)N/ADepth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068724Metagenome / Metatranscriptome124N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0115662_1006566All Organisms → cellular organisms → Bacteria15509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0115662_1006566Ga0115662_100656615F068724MTQHHGRVEKMRVGIPALFSVEVDYYKDLENVGPTGQMTAEEEIKYWLSKGRDPYIMNPKLPLPQIKAATKLMDRD*

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