| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008949 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0067852 | Gp0122840 | Ga0098072 |
| Sample Name | Marine viral communities from Cariaco Basin, Caribbean Sea - 30_WHOI_OMZ |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 52714951 |
| Sequencing Scaffolds | 15 |
| Novel Protein Genes | 20 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 10 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Tritonvirus → Prochlorococcus virus PSSP3 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Caribbean Sea: Cariaco Basin | |||||||
| Coordinates | Lat. (o) | 10.847 | Long. (o) | -65.114 | Alt. (m) | N/A | Depth (m) | 2503 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000060 | Metagenome / Metatranscriptome | 2944 | Y |
| F003103 | Metagenome | 507 | Y |
| F004651 | Metagenome / Metatranscriptome | 429 | Y |
| F004818 | Metagenome | 422 | Y |
| F004867 | Metagenome | 420 | Y |
| F005094 | Metagenome | 412 | Y |
| F005219 | Metagenome / Metatranscriptome | 408 | Y |
| F006641 | Metagenome / Metatranscriptome | 368 | Y |
| F008755 | Metagenome / Metatranscriptome | 328 | Y |
| F010691 | Metagenome | 300 | Y |
| F013235 | Metagenome | 273 | N |
| F014327 | Metagenome / Metatranscriptome | 264 | Y |
| F016733 | Metagenome | 245 | Y |
| F020998 | Metagenome / Metatranscriptome | 221 | Y |
| F028937 | Metagenome | 190 | Y |
| F046421 | Metagenome / Metatranscriptome | 151 | N |
| F048566 | Metagenome | 148 | N |
| F054102 | Metagenome | 140 | Y |
| F064796 | Metagenome | 128 | N |
| F105372 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0098072_112947 | Not Available | 820 | Open in IMG/M |
| Ga0098072_114483 | Not Available | 769 | Open in IMG/M |
| Ga0098072_114548 | Not Available | 767 | Open in IMG/M |
| Ga0098072_115308 | Not Available | 746 | Open in IMG/M |
| Ga0098072_115827 | Not Available | 732 | Open in IMG/M |
| Ga0098072_119027 | Not Available | 660 | Open in IMG/M |
| Ga0098072_121032 | Not Available | 623 | Open in IMG/M |
| Ga0098072_122754 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 595 | Open in IMG/M |
| Ga0098072_123568 | All Organisms → cellular organisms → Bacteria | 583 | Open in IMG/M |
| Ga0098072_124623 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 568 | Open in IMG/M |
| Ga0098072_124772 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 566 | Open in IMG/M |
| Ga0098072_124789 | Not Available | 566 | Open in IMG/M |
| Ga0098072_125633 | Not Available | 555 | Open in IMG/M |
| Ga0098072_128641 | Not Available | 522 | Open in IMG/M |
| Ga0098072_129698 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Tritonvirus → Prochlorococcus virus PSSP3 | 511 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0098072_112947 | Ga0098072_1129472 | F004818 | MEKNIVERFITWRINGMIVAEKRLKSLLKADTKPGASDKELDGLYKIISIQLKTISDMQNEIITLQLIDEENKK* |
| Ga0098072_114483 | Ga0098072_1144832 | F004867 | MKKEIESVIRNDDTFKITFYPQNMNADVEDHQVQSTTRLASWNDDCDFVFKPKTKNVSPCVKFYDVENKGYRIATTKYRAVSISLDNNHYTWTGI* |
| Ga0098072_114483 | Ga0098072_1144833 | F105372 | MKRIIEWLDWNDVRNTYPKWLWVANGVVIVMALLVILFV* |
| Ga0098072_114548 | Ga0098072_1145482 | F010691 | MKYVWEKLKACKRELLISIPNRYMGLVLLLMLLVIYLK* |
| Ga0098072_115308 | Ga0098072_1153081 | F028937 | PPPNPAALGACHNHAVDFVVRGILPIPEGRELFGWVRELRDRFYREINQAPVMPLHYCYDHDQERRQGPDGGWGHQLPKEADDDENSYCIEGREGWRVFDASQR* |
| Ga0098072_115308 | Ga0098072_1153082 | F020998 | MQANAKRTSTRPGYVFDDHAALMLELFDILDRAAVEYDHSEDVVDDFQAYLKDWANRRDEKPQR* |
| Ga0098072_115827 | Ga0098072_1158271 | F008755 | MNKSRVARDLWRKVFNDNIINLSDGDARKQVVREFLADPVNKKAGWKAKDARFMRLGFQKVAKENNFNVMNIGVTPTPSRSKTQKGSMNINVKSKQKNPTPMIDAIKPPTEEEKKFGALPQTPQLVGQQAQAVQYSAQSVGQIFETLFNIFSARTGCSP |
| Ga0098072_116238 | Ga0098072_1162381 | F000060 | MAQKFNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEAESHEGTLKEAFELTKDEIKILKKLIKELYVLAEPTRIKGYTDEQMFEANAANEFTVNIGREIQAEMIANGRPSAAKLRNAMSKPHTWNALKQIGLIPKKTKILEGNIDPQLKIE |
| Ga0098072_119027 | Ga0098072_1190272 | F064796 | MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAISITINGLQDGSTATTIANALGLVNPLEIDVGGIPQIRLRLSDMYAIDMLWLQHNPLTKISANTNEEWIVNQIVYPCWFPPSRAEATLSATYAAVTNADNTEISITSEYLDGIPRNEA |
| Ga0098072_121032 | Ga0098072_1210321 | F013235 | MATRIKTQFKNNKQGWTSKLMTPKGVNTPYNGSYMNSKLGDVEVSNKSLEE |
| Ga0098072_122754 | Ga0098072_1227541 | F054102 | YNTDGSAMNVTLSVYDNSATTRYTYDYKGSLAAATKFEFLNSSNSILLVLEETDKLQVTCETTGGLNLIVSALEISRA* |
| Ga0098072_123568 | Ga0098072_1235682 | F046421 | MAKIGQPPNKGSATAAGPNMNPPPYAEGKPKVVKEPKGSKKHSTIDGMIDACV |
| Ga0098072_124623 | Ga0098072_1246231 | F016733 | VATRHTYASSDDLRDYLAGTSFSSGWTSDASSIRRILEASSRRIDLYTEGGTFGPLTETRYYDIGSGSLVQSPQYAVLAGTDAIATRSPWRMSSRWTAGWSPRQR* |
| Ga0098072_124623 | Ga0098072_1246232 | F006641 | MPKAICIQSFSSGDGIAYESGVEYDVPAAILKANPDYFKQSGTAENKMEDTAEDKSADEATEEVTEDAE* |
| Ga0098072_124772 | Ga0098072_1247721 | F014327 | QATMSQADEIDAAASQVRKLRGEFSQPLNAIPVTSNDVAVYNAMDNTARIKGDYKPASWVKGLPAMAQPLWVQEQMGDNVKDEARFMTDTFIKWMRSPSDDMFWKTASPDEAKAMQEDTDVEGGFFVPEQFINQTIHDSGVPGSQLRPLCTVIRVASKDGYLPTMASATWAAIAEEAAPTESTPVVGQ |
| Ga0098072_124789 | Ga0098072_1247891 | F005219 | MTSGENQPIRPISSAIRRTCPKCGGDMSVELLRPDPHDKPVLFWVCPCGYWEAAPADIEASSANHPRMPGF* |
| Ga0098072_125633 | Ga0098072_1256332 | F005094 | MGRSANSFTNWVGHASEMDGDRVTLPEKELWVAVLSRAALDACKGPPRLNMDLRSNITHKNNYTYDRDQA |
| Ga0098072_128641 | Ga0098072_1286412 | F004651 | MTTSETIENHYGEAHAHLSDDELLAEMEHIGAILDGFKNTLGHLEQEAYRRIEERGATSIPSETYICEMETGFKYDQASFGPLKEVFNDADLKRCLTPAHTEEVKIEDKWTTATVKSLATKYGAEAMRIFENARTESRGRLKFARRET |
| Ga0098072_129090 | Ga0098072_1290902 | F048566 | MVVASYKLQVDWANDGSWTGTGETIDMGRVRGITCSFGRDRASQLTGKSKAGKLRATLDNRSGDYNAFNSDSPIYGNILPGRPVRLLGTSTTQSDQAIWQGFLTRITPQVFLGGDATAILEATGPLGQI |
| Ga0098072_129698 | Ga0098072_1296981 | F003103 | MKLYKIEASNWEAFFGTYEEPIERDVVRIAQTPSNDAFLFLAKDTFDELELLDSVPTGFDFTYCQEWGLTVDADVIDRVIIDLRKKAYPSWQDQLDYIYHNGVDGWKADIITPIKEKYPKR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |