| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008895 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117940 | Gp0126010 | Ga0103421 |
| Sample Name | Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS06_Heart |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of California, San Francisco |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 3780346 |
| Sequencing Scaffolds | 1 |
| Novel Protein Genes | 1 |
| Associated Families | 1 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Viral Communities Of Boa Constrictors And Annulated Tree Boas From Steinhart Aquarium In San Francisco, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Viral Communities Of Boa Constrictors And Annulated Tree Boas From Steinhart Aquarium In San Francisco, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | San Francisco, USA | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F053764 | Metagenome / Metatranscriptome | 140 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103421_100180 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. | 943 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103421_100180 | Ga0103421_1001802 | F053764 | MVNTEIRLIMYFAAKDGEALYSQSKQDLELTVAQIMSFLLQNLGSN* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |