| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008870 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117913 | Gp0125708 | Ga0103382 |
| Sample Name | Microbial communities from dairy cow rumen, for metatranscriptome studies - 6180_rapeseed oil diet |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Aarhus University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 19947985 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | ||||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006970 | Metagenome / Metatranscriptome | 361 | Y |
| F011364 | Metagenome / Metatranscriptome | 291 | Y |
| F028974 | Metagenome / Metatranscriptome | 190 | Y |
| F078281 | Metagenome / Metatranscriptome | 116 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103382_1001351 | Not Available | 572 | Open in IMG/M |
| Ga0103382_1001649 | Not Available | 534 | Open in IMG/M |
| Ga0103382_1001657 | All Organisms → cellular organisms → Eukaryota | 533 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103382_1001158 | Ga0103382_10011581 | F078281 | TVVMNNKEFIVYLIDSNKITKVTYVNDFVIPCYARWIEISGNKLILTGGEKDYIESLNSTYMFKFRQIGDTDEGFSAKVYHKKDMICKRRAHSLIYFNDFIYAISGVDKLEMIKKCEKYDIFNDEWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDFLNEEKGWELLELKSTSKDCEEVDVKKNRME |
| Ga0103382_1001351 | Ga0103382_10013512 | F011364 | MVIDSEVNERDEGIFYLLPSEMSKSGLLNPEKFDSCDIRNVEVDDIRPSALLGILSSLKPNGRVTVTLCEPIAVMQPYEARMVEANAKLAGFVDIQTSPGTFFNKFSNQEDETLVVTFTKPERPR |
| Ga0103382_1001649 | Ga0103382_10016491 | F006970 | KQESENPLLDKKVVRKVLQTHAYSTPWDQPIYQETVVSNAKYSKIESVFEIPYYRNPPAYKSGDFWERFNMCVERKKNLKQTLDDITKRYDDIMVVFNKELDKTFAGNPTQEQKDRMKEYIIQMMTVYHESREVEHYDDIFKKEVADKNMTFNEEEKEKYDDGMAILSKAFPFQLTV |
| Ga0103382_1001657 | Ga0103382_10016571 | F028974 | TGTNKGDISILELGKPGKEKLIKEISYFGGNLEIRIIRYNAIDREIYTGDQKGKITVWSLKSGQSIYAWQAHQEAITQMKYFPNKRQLLSMAKDKKIIYWQLPENWVNDSIKKFQEENIREINNTRATERLQKAAQKKEGDDDSSSDDSLDGWDIRP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |