NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008803

3300008803: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NP-2



Overview

Basic Information
IMG/M Taxon OID3300008803 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0117972 | Gp0126359 | Ga0103770
Sample NamePlanktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NP-2
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Duisburg-Essen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size153856357
Sequencing Scaffolds18
Novel Protein Genes27
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae5
All Organisms → cellular organisms → Eukaryota → Sar3
Not Available2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePlanktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomeeutrophic pondplanktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUniversity Duisburg-Essen, Germany
CoordinatesLat. (o)51.46Long. (o)7.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000020Metagenome / Metatranscriptome6197Y
F000023Metagenome / Metatranscriptome5736Y
F000044Metagenome / Metatranscriptome3572Y
F000070Metagenome / Metatranscriptome2710N
F000073Metagenome / Metatranscriptome2639Y
F000076Metatranscriptome2620Y
F000241Metagenome / Metatranscriptome1481Y
F000371Metagenome / Metatranscriptome1220Y
F000606Metagenome / Metatranscriptome993Y
F000631Metagenome / Metatranscriptome971Y
F001300Metagenome / Metatranscriptome727Y
F003455Metatranscriptome485Y
F003495Metagenome / Metatranscriptome483Y
F004094Metagenome / Metatranscriptome453Y
F004725Metagenome / Metatranscriptome426Y
F004726Metagenome / Metatranscriptome426Y
F004781Metagenome / Metatranscriptome423Y
F009877Metagenome / Metatranscriptome311Y
F014616Metatranscriptome261Y
F016241Metatranscriptome248Y
F017489Metagenome / Metatranscriptome240Y
F022887Metagenome / Metatranscriptome212Y
F057415Metatranscriptome136Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103770_1012639All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans964Open in IMG/M
Ga0103770_1013769All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae923Open in IMG/M
Ga0103770_1015170All Organisms → cellular organisms → Eukaryota → Sar876Open in IMG/M
Ga0103770_1016853Not Available828Open in IMG/M
Ga0103770_1017137All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria820Open in IMG/M
Ga0103770_1017207All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis818Open in IMG/M
Ga0103770_1018342All Organisms → cellular organisms → Eukaryota → Sar790Open in IMG/M
Ga0103770_1027529All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae633Open in IMG/M
Ga0103770_1027556All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae633Open in IMG/M
Ga0103770_1028899All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae616Open in IMG/M
Ga0103770_1029407All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae610Open in IMG/M
Ga0103770_1029462All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales609Open in IMG/M
Ga0103770_1029706All Organisms → cellular organisms → Eukaryota → Sar606Open in IMG/M
Ga0103770_1031485All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum588Open in IMG/M
Ga0103770_1039854All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata516Open in IMG/M
Ga0103770_1040493All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis512Open in IMG/M
Ga0103770_1041584Not Available504Open in IMG/M
Ga0103770_1041776All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103770_1007882Ga0103770_10078821F000044KHTTNKMKAFILFALIAAASADKAPLQIGQNGRKELRKGRQNGIEVQGGVDFSACQNDPDTGLCCVEKEETVKTIQKDPILECTHKNVEKCHYTYVTQFSPAQEEVCEENFEKTCQITFKQQAFNETVKKCYKPLEKVCNGQGPEQCRTVYESSCTTKYIEKQPGKFVGDTHCEKLPVEICGAGCVTEEGAEECHDKVITSLVDVPEETCDLNPQKTCRFQTKLVPRLKPTAECTTIPKEVCNLKFTQPQEVDKPLKTKWCLDPTPAEPGDKYEEGDALGAPLGAAASTNVQIVAQPEAGFDSQAQFQDEALPSYNENLPQYNNNFRQ*
Ga0103770_1012639Ga0103770_10126391F014616GNTGPDWGFEEFILQKSRYMKKCMDAGVPMAPTIFAEKSERSPESLLTQIKERGWNTFVMKQSESGFCLGFLKLKVEDCEKDPSILTTYFADYENCPEFIVQEAVEGFTRNWETRCFWYNGKFLYAIANMAAVSSGDGAERIITGDDIPQEFLENAKRIGEQALKCLPDIKVQGGGSVPMILVCTDIGCSDGQMYDKDCKWNPAEKTFFLNEIEPSSTTYFVRHLKFDCIPIYGKLYTETARKAKEQMDIAEAARKAREQTDSSAAAKLEKKRAVENADDEAYAKKARCGA*
Ga0103770_1013769Ga0103770_10137692F003495LVTNCDEISKLIKAFPKDIAALDKRIVLAKVNSQGSGR*
Ga0103770_1015170Ga0103770_10151701F004726MTEQQRKPSSFLARLGTFAVAAGAASWALSAPSAFVGALSPSSRSTSTQMKGYRLDWMLEKKDGTSDLQVQDGFFIGERGFEKSQNAQGLRYRMRPTPEEYKKGIEVEGYMVQIGPFKMKLGEAFGGTGNNDKLREIKRKIAKEGITDPAKIAENEYWLKRYGHKRWSEYYVDQSGVRANKGFLRGLAAWSGLDPLKEEKGKTWFEADYGKPWLKKYSDSTIKEKPSKAQFEKEYNSGRLLNK*
Ga0103770_1016853Ga0103770_10168531F000606HRYLFKFQNLLKKMKAALALIFFACVAGSMATDARNPMIEALVQQGQGIAQSVLGQLQQQILGFVQQTVGQLTSLFGSFGRFDFNAIIEQFKPLVNQLINQALGSVAGSLQGLIGGRAGIDLGAIFSEFLAGVTKPLTEIGQHFLNQGLSAVLGSLAGSRGISDLFAGLQQQIGTAVGAAQGALSGALSNLAALGSNLLDASKPHWEQLQEQLIGHGLNALGSLSETINNLHGSITGGR*
Ga0103770_1017137Ga0103770_10171371F022887MEKKLNKWFAMTLDSNNDGLVNWTDFEKAIEAIVPTEDAKKNARLKILRKRVEQNFQKYFWDLCAAGDANGDGNIDLDEWLDVMNEIIKHVKDTNNFPEWYEGLHKSVFRAHEFFGTFIILLKSKILAFLTVDSFFYLDDRNILKTEFADMMATWNVGEAEAEKAFDFITDLGKKKMDYNLFSELMKKFILNETQGHPLNFGLDK*
Ga0103770_1017177Ga0103770_10171771F000241MTRRTLLPVVFAGAAVTYVFSTTMSFVGSFRPAHCRGDLVPARVSAEYLERCGPKDSDVPFQSSAVTGPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVDVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103770_1017207Ga0103770_10172071F004094VSGEELGHTEGTDAVASENLSHLLVGGEELLVLGVLEVVLLDVGPELLDALGAGGLLLADDVSEVGGELHGLGES*
Ga0103770_1018342Ga0103770_10183421F004781TVWIQGRYLPTPATSGLSVTKILAVGGPFLQGHKVHVAPTWTTWDDQRVLEAFPSDYSVPGLIEMHYNNVGEVLQAGREGKALHVVHIKIADGTPEGLLIQVNQWTEPTEGDYINVKITMHQQPGQDGHCGNFNGDPVDDDRLQVRVRMGKNGVDPPELLFKTKTPVVEANRPNINDCPAAALENAHVVCKQREKKFIPSMACLVDVCFGGAAFAKEG*
Ga0103770_1020499Ga0103770_10204991F000070VNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTLKSASHEVDIQKNSDAARKMEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFEDLKHCVASLTKGVVKFAQVVGVFP
Ga0103770_1022706Ga0103770_10227061F000023CILELATMEYPYSECKNAAQILKKVSTRLQDFEAQITAQLGNLQTDFDKKLSHVNRGASATKPLDAAGGAAGLDTMAEDLDQLKYDVGELKDLLANNKGEVNHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVR
Ga0103770_1024371Ga0103770_10243711F000020ENEITIKDAQEAQTAVAQALTVLKEFYAKAGEATALLQQEPPAIFDSPYKGMQSENGGVIGMLEVIESDFARLEADTKAAEATAQKEYDTFMTDSKVDKAAKTTDIEHKTAKKQDESQGLIVKKEDLEGTQKELDAALAYFDKLKPSCVDAGVSYETRVEHRQQEIQSLQEALRILNGEDIAL*
Ga0103770_1025502Ga0103770_10255021F000073VEEHANFRTICEEGKGKLQWERDIPQDSLDNLQSLANTDFHKNLGKIVHDIYLTAHNLFMDMPQGDHKKRAKYRFASKTLMRILPDGLKNEVEGLIAKNTITLDLYEILGQCTWGQRSL*
Ga0103770_1027529Ga0103770_10275291F004725PATAGKRSGYSRASIFYGADEYIEELKRKYEQDQEIATMKQILPDEGDPNAGQHAESKDKMLRVEKNNENRSHKTGRLFPTPNKPDPMPQHLAFLFTKITPEQMMYMWRILTLIFVSQCLMVVAYCAALAMFPDYWWTCTLCFGVPFAYIAIQNIYIDHDVMHGATFPPYEWQNYITHPFADFISLPWQEFVLEHNRHHASTVDLLQQGE
Ga0103770_1027556Ga0103770_10275561F001300YILLSVLLHVFVGLKRTWDMKLALAKSQGIGVLNLAISGLMLLTFMTIHLFQFRFGDTDQFGPYYVRPPPYLINFWGIPSLNLFWTDDPSVEPVGVRDIYALEFQIFKNQFWSMFYVFAVFVFMAHACWGWQKVTPVLGIPKGHVFKVEIVGYLIMIAMGAVYISFPVYVMLTEPFTGYQPAIQVPSDRVGV*
Ga0103770_1028733Ga0103770_10287331F000070KVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVDIQKNSDAVRKMEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFE
Ga0103770_1028899Ga0103770_10288991F016241NATALGGGWYSGGDKIWGSGEGIENVHADNVGYYNAGMAAAHAQCLDPGCALIVNPPGHRTVEVFHIHTVHFGSYGANLKKKLESATCASPGWHGGAPCAGKAAFFPGFPAVFSSAMGGGDIHSASVIAWPASCGGRGTIVQLSFGCSIEHQIRGDFNPKLR*
Ga0103770_1029071Ga0103770_10290711F000076VFLCFSLSPQGPQNMAEEEAQEVIFTENTAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVTAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI*
Ga0103770_1029407Ga0103770_10294071F016241PGNVGYYNSGFAAAHARCGDAGCALIVNPPGHRTVNHFHIHFVHYSSYGANLKKALESKVCRSGGWHGGGLPCGGKATCVDGFPGVMSTAMRGGSVHDASVIAWPGACGGRGTIVELAFGCSIEHQIRGDFDPRFR*
Ga0103770_1029462Ga0103770_10294621F017489RVKHNAFVLSLWACIWLLGTWPLGRPLSEGWRFMFTVSFFARLGFSAAWMFITNFTHSLPWNRFLANDPARTWPLLHDIMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWKKVHDAAVDVLHNGLWLPNGDEETEMQKQQRKRSVLMKSSMNK*
Ga0103770_1029706Ga0103770_10297061F004726RMRPSNQEYAEGKEVDGLLYQFGPFKFKLGETFGGTGNNAKLRALKKQVAEEGITDQSKIEENEYWIKRYGHKRWVAPYVDQSQGTAKTFFRGLAAWSGLDPKKEERGVTWFEADYGKPWLSKYIGTKEKGWVSEEQVQKEYDTGKLLKK*
Ga0103770_1031485Ga0103770_10314851F004781AVWIQGRYLPLPSTSGLGVTKVIVVGGPFLKGHRLRVETRSAFWDGQAVLTGFPSDYTVPGFVDMHYNAVGELMQNGREGKALHIVHIRLEDGTPEGLQIQVNRWMEAAEGDYINVKITMHKQPDQDGHCGNFNGDPADDDRLQVRARVGKTGVDPSMLMFGTKTPVVEANRPNINDCPAQKLEEAKATCKAREN
Ga0103770_1032381Ga0103770_10323811F003455YATGAASMVQAASQQPAMPEKFEKATGAGTSIIGILEVVESDFATSLSKEETQEADAQSEYDTITQENKVTKTIKDTDLKYKNEELKSLAKAIAELSGDKETTGAELSAVNEYYAKLRERCIAKPETYEERKIRRESEIKGLKEALTILENETAFVQRKTRHGHIRGSLTAH*
Ga0103770_1039854Ga0103770_10398541F000631MQPSTASLVAFLALISAHGAEGSVLRARRAAQEPDTACGKGFENLVKGSQDYYATASVELWTHPYHTMDNATFGQEFQCWFASMCTTKCGGLPSQAAARKSELAKMCKSVEADWLKIWKMFSQEEVVWFKKSYPSSEVQGEQESTVFYKQAMETAKEV
Ga0103770_1040493Ga0103770_10404931F000371SAEKKSTEGLSKPQTLDEANAMFASVNDFDQSCLKHLKILNDAATAANKMTTHKEADTEVKELNDRYLKVKAVSDEWVKKVDTLVKEWKLLDSTVNDLNSWVAKDRGTEGEQQFSLEKMESTLGELKNIFKQKEKLVENL*
Ga0103770_1041584Ga0103770_10415841F009877VVGKNVLRSRLINLLKLIVKAVGQRRDLLEQQNEAANALFEALLKTFNENMTRVDKLLERLSHEKNLLSKRGLALNDSLRRAQRITKLSVKAASTKNRQCHQIKVRNARLHVATQKIRNVVAQIEEILQERFGALKTFFIERKMKFEDKQ*
Ga0103770_1041776Ga0103770_10417761F057415GVMSEDEVCPWTLFLTMALTLLKGVLPHVPRMLPVLISDPEMRERVSETFTSEEFINNIESYFVQNIKNDIQAPINRQIIKSSETIMYFIDVFEGLAKSFFAANDDSGNDLGTTDNKPRSDSGLFSGSALGQVLNFAKVVYNLTK*

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