NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008800

3300008800: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-2



Overview

Basic Information
IMG/M Taxon OID3300008800 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117972 | Gp0126356 | Ga0103767
Sample NamePlanktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-2
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Duisburg-Essen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size86810048
Sequencing Scaffolds5
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea1
Not Available1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePlanktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → eutrophic pond → planktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUniversity Duisburg-Essen, Germany
CoordinatesLat. (o)51.46Long. (o)7.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000073Metagenome / Metatranscriptome2639Y
F000241Metagenome / Metatranscriptome1481Y
F000577Metagenome / Metatranscriptome1015Y
F004604Metagenome / Metatranscriptome431Y
F009877Metagenome / Metatranscriptome311Y
F027191Metagenome / Metatranscriptome195Y
F080070Metagenome / Metatranscriptome115Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103767_1005785All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea1003Open in IMG/M
Ga0103767_1010967Not Available726Open in IMG/M
Ga0103767_1012599All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus678Open in IMG/M
Ga0103767_1020768All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae523Open in IMG/M
Ga0103767_1020918All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae521Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103767_1005785Ga0103767_10057851F000577QGEGPEECKTVYESMCETRYHEHDVEDDVVDCETIQDEKCEDVTQGYTTEKKCTKWPRQVCKTEKKQVKKYSPETECKKVPRELCGPSGCVLTPGPEECFDKKETVVQEVPEENCNLEPQRSCKHVTKLVPLLKPQEECVDIPKEVCSRSRTNPRKVQKPVVKKWCYVPTKESGLA*
Ga0103767_1010967Ga0103767_10109671F009877LFVNGRMARQTAIIRLLKNARKQLINAHKAALGTEFVEVKPEVISALSELRVEFTNTEDHFDGLRPIIANLLQNMSSPVVGKNVLRSRLINLLKLIVKAVGQRRDLLEQQNEAANALFEALLKTFNENMTRVDKLLERLSHEKNLLSKRGLALNDSLRRAQRITKLSVKAASTKNRQCHQIKVRNARLHVATQKIRNVVAQIEEILQERFGALKTFFIERKMKFEDKQ*
Ga0103767_1012012Ga0103767_10120121F000241FVGSFRPAHCRGDLVPARVSAEYLERCGPKDSDVPFQSSAVTGPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVNVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103767_1012599Ga0103767_10125991F080070NHAGDAVTIVAQTIASLNQIIGAGKRDANQKDLISTIVSSLGLGSVWSTITALGSSVSSQFIQIGTQLLFAGSQIWAQVKPVLAQLVSDLTNHAGDAVTIVAQTIASLNQIIGGSGKRDLVSSIVSSLGLDQVWSTITSLGSAVYLQFIQIGTQLLFAGQQIWAQVTPVLSQLKDDLINHTGDAVTIVAQSIASLNQILG*
Ga0103767_1014946Ga0103767_10149462F000073GKLQWEPLSTPAENLKLHRTFVQWMEEHANFRDICENGKGKLQWERDIPQDALDNLQNLANTDFHQNLGKIIHDIYLTAHNLFMDMPQGDHKKRAKYRFASKTLMRILPGDLKNEVEGLIAKNTMTLDLYEILGQCTWGQRSL*
Ga0103767_1020768Ga0103767_10207681F004604LRCNKNGVQQQAEASQATPAASSTYVESAADARLFEQVYLQYTSEYLKGPLYWHPDKSQGVLPDYPGEPLLKDGKLTSNVVGNLKTFSSTELAALAMLFFGIGLYGNLQFLIYDPQWEKVDAGGYFNVSYIVESLLLPISFFMHIAAYIQRMNGK*
Ga0103767_1020918Ga0103767_10209181F027191TKGKRHKVVRFLISPKKKRAKIEVNKIMNPAFLLGTAFNIAYWHRKYHSGTICKGVSNAQASNALSGCEREENPK*
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