Sample 3300008792

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300008792

3300008792: Microbial communities from freshwater in the western basin of Lake Erie, USA - 1163-1

Overview

Basic Information
IMG/M Taxon OID	3300008792 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117964 \| Gp0126286 \| Ga0103697
Sample Name	Microbial communities from freshwater in the western basin of Lake Erie, USA - 1163-1
Sequencing Status	Permanent Draft
Sequencing Center	University of Tennessee
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	8336686
Sequencing Scaffolds	15
Novel Protein Genes	16
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	western basin of Lake Erie, USA
Coordinates	Lat. (^o)	41.46	Long. (^o)	-82.71	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000052	Metagenome / Metatranscriptome	3223	Y
F001926	Metagenome / Metatranscriptome	616	Y
F007021	Metagenome / Metatranscriptome	359	N
F008069	Metagenome / Metatranscriptome	339	N
F015304	Metagenome / Metatranscriptome	255	N
F018650	Metagenome / Metatranscriptome	234	N
F027111	Metagenome / Metatranscriptome	195	N
F030674	Metagenome / Metatranscriptome	184	N
F053090	Metagenome / Metatranscriptome	141	N
F053819	Metagenome / Metatranscriptome	140	N
F059666	Metagenome / Metatranscriptome	133	N
F066479	Metagenome / Metatranscriptome	126	N
F076911	Metagenome / Metatranscriptome	117	N
F079377	Metagenome / Metatranscriptome	116	N
F102145	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0103697_100537	Not Available	2156	Open in IMG/M
Ga0103697_100904	All Organisms → cellular organisms → Eukaryota	1494	Open in IMG/M
Ga0103697_101028	Not Available	1341	Open in IMG/M
Ga0103697_101100	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1276	Open in IMG/M
Ga0103697_101560	Not Available	957	Open in IMG/M
Ga0103697_101699	Not Available	898	Open in IMG/M
Ga0103697_101730	Not Available	883	Open in IMG/M
Ga0103697_101778	Not Available	866	Open in IMG/M
Ga0103697_102084	Not Available	765	Open in IMG/M
Ga0103697_102395	Not Available	684	Open in IMG/M
Ga0103697_102957	Not Available	581	Open in IMG/M
Ga0103697_102999	Not Available	572	Open in IMG/M
Ga0103697_103084	Not Available	559	Open in IMG/M
Ga0103697_103228	Not Available	537	Open in IMG/M
Ga0103697_103357	Not Available	521	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103697_100537	Ga0103697_1005371	F102145	MMVSYKIHVLKILAEKMATEKQEATETLLYNFDYPMVTECGAVKITDHHVFLQFPEKPTVHVEHAVKLRRNITLYVENGQCFSLDWLPIQTVTDFFRVKEMIEKCLQSYSYLLDNKTHFSPHTFSVNPINYYESLTTGFTTNSFSLSCFEHTVDTCIQLSVINKECDKKEIPLHFQLCIGKHVVFCTERDLKCVDKAKDVHFIVQFILQKMLNISLL*
Ga0103697_100904	Ga0103697_1009041	F018650	DWWTFKPSSPLKAYLSDREIVMDEYFSLEELRYRVMSILEHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI*
Ga0103697_101028	Ga0103697_1010282	F053090	VGLKLKYQFDEELIETYISSKHKNNEDDEQPAKKLKLYNKKKISILEYSCVQLPLVPFIDYLEKYSKTFVDQCLTYNNSNETSD*
Ga0103697_101100	Ga0103697_1011002	F001926	VRHEDIPEINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRRRYERKRIKIEKLLTLGYTTSGDP*
Ga0103697_101560	Ga0103697_1015601	F076911	MKVASDVLLLLCLHDFGLWVSVGLGQATAFLYSEARLYKGPSQSTLPQL
Ga0103697_101699	Ga0103697_1016991	F015304	LLAVTNQAIYPSLLPAESILRTIPFYSKQSILSATVSAIISSKMNTIEISVPEFINPFTVYYVKTIPIAHNTTNRIYTTLKLENKYVAVDPAGSTFLYKPETCATKNTVTTCNPAMLEIHKEAQTCIEALMSPSQIGAGKCIQSMKVEKVDQQSYIYKTENTVIRIFSPFPDTVSTLCGHTLNQNAGTLKEGYTDLSFKSDCVLYTSQMVIYSPYKPTIEETIKPLLSTPDLSMEIESLLSDIHEVHRINLTTLGQEFQTLNIDIQNELMDLSNVNDVLQRAANIKEITIFDPTDIKLE
Ga0103697_101730	Ga0103697_1017301	F059666	HKSYDKKEAKVMAVKATTKEEPHFPPPRRWSPDNPWGRPCIMDECSEEHAPPSCAVFKSKTPEERLAAVRRRELCVLCFRHLDTKRCWSLGKLNNCNVRGCGRGHNYLLHDVLQNEEAMMVSAVPGQTGRQESSLRCRQTVAAENEGQCFRLNVLYDWGASVSMISEEAVEVMGLISTKQAKRIIKGLGGATTVSKGTCTLGLVARNGDRKTVTAWEVGEIASLPGGEPPEDVDEQFPGLRYLSEPNCLIQKAGPVHLLIGMDHAHLMPEHVAESADLSSQLRLMSSMFGGQHI
Ga0103697_101778	Ga0103697_1017781	F027111	MDIASFYGIVSYAVGVSLILSVAGIKSGRRFFHLFNRRRRHAARHTGQILGNGNDVRVNHRPPPRDQEELLELGDLMMGGMESVNRLLTGNPNLEVFGQEAERCSSSSGF*
Ga0103697_102084	Ga0103697_1020841	F053819	MLLIPANVELMVLPLPTWEKRTWREAQGKLAAEDRSWYMSRFVNERLRYAINMVATSERHVLPKAIPYHRSQRSPSSEGRGGRYSRPGSFGRNVKTMVVKESGSADQKKVRFPPPKNWNPDAKWTQNCVMFKECGEKHAPWMCDAFKKLSPQQRLKKIEERELCHLCYRHLQGRDCWSKDKVPNCGEDGCKAAHHHLLHGALVQGRVMIVQDISTKKAGVFLCREDVRVEGAGGTSSLHALYDWGAT
Ga0103697_102395	Ga0103697_1023951	F079377	VYVQTAGPSDFQNVSGISFLPANFTIDEDNFSSITENSLVVLDDFSFKLANNKQAKINFLKVVNYILVIHKLV*
Ga0103697_102911	Ga0103697_1029111	F000052	AFNETVKVCRTPLVKDCDKKGPEICRTEYESECWTKQEVHDVEDDVVECETVQDEKCEDKTAGYTSFTKCSKWPREVCKASKKKVKKYSPVTGCTKEPREICAPAGCGFKEGAEECFDKTQTVVQDAPKEQCSLEPQRTCAHVTKLVPKLEPSEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPTAESGLA*
Ga0103697_102957	Ga0103697_1029571	F008069	GRKINISVNTLPSKYSGATKAQWKTLPVPCQPTTITKKPSTKRIATIKTPNTPYYVEEQLLEQDSFLFSTSIELSVNKIKPERNYKTRYKSSFQSDRKGILYINLPPEEDSNKKVRFSRLEIKFY*
Ga0103697_102999	Ga0103697_1029991	F007021	VGPPPRQNQEAGQAAAPVLGLGLEAIQGMTNAMNAIANQVIRSSGRSGRNAGWPYFDGTFRDYPGFKRKFESFRTTYHRGTPTRELFQQFREMCLPEKLSIRIKSANTMENAWTRLDAWFGDKNLFIKDLMQDIRSVSPIKDGDDERLMDYYVTLQAHIEEAHSAGALGMLLIPANIADMTRILP*
Ga0103697_103084	Ga0103697_1030841	F066479	MTCLLGNTDARTVYRNFDLANLNVNLGDRTHMLYNRYLCYNRFLPPDEKHYFAHLATNTLAVAPGSATDEKGAFNIFPMSLTTEEMNKSTSSALGK*
Ga0103697_103228	Ga0103697_1032281	F030674	FRKINGLFYWISEDSLILHEVAKAAGLEGRGYGKKVDSLYVRDMESTCAYCVPLVDWKGEVQYLWARGVDYIARLAGKEDPRKWYAQFSELAMARDTEAERKAPIEMMIALDNWKWMPVRQPLRLYEYSHDKKVKNRRAQARTQFGKRLLLLPLVEASEVIPAEEEDDEEYIEKGASKD
Ga0103697_103357	Ga0103697_1033571	F053090	VGLKLKYQFDEELMDPYITAKPKSNEDDELPAKKFKITDTKKISILEYSSVQLPVAPFIDYLEKYSKTFEDQCLTHNNSNEKTDSCIPQ*

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