NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008788

3300008788: Microbial communities of hydrothermal vent plumes from the Guaymas Basin in the Gulf of California - Plume GD6i



Overview

Basic Information
IMG/M Taxon OID3300008788 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117961 | Gp0126277 | Ga0103688
Sample NameMicrobial communities of hydrothermal vent plumes from the Guaymas Basin in the Gulf of California - Plume GD6i
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Michigan
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size71798817
Sequencing Scaffolds16
Novel Protein Genes21
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available11
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda → Lottioidea → Lottiidae → Lottia → Lottia gigantea1
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities Of Hydrothermal Vent Plumes From The Guaymas Basin In The Gulf Of California
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent In Guaymas Basin In The Gulf Of California → Microbial Communities Of Hydrothermal Vent Plumes From The Guaymas Basin In The Gulf Of California

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal plume → hydrothermal fluid
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationGuaymas Basin in the Gulf of California
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000070Metagenome / Metatranscriptome2710N
F000073Metagenome / Metatranscriptome2639Y
F000155Metagenome / Metatranscriptome1877Y
F004094Metagenome / Metatranscriptome453Y
F004471Metagenome / Metatranscriptome437Y
F005390Metatranscriptome402Y
F006651Metatranscriptome367Y
F025643Metatranscriptome200Y
F032157Metagenome / Metatranscriptome180Y
F052865Metagenome / Metatranscriptome142Y
F054098Metagenome / Metatranscriptome140Y
F065401Metatranscriptome127N
F072408Metatranscriptome121Y
F073166Metagenome / Metatranscriptome120N
F088224Metatranscriptome109Y
F088935Metagenome / Metatranscriptome109N
F092158Metagenome / Metatranscriptome107Y
F092198Metagenome / Metatranscriptome107N
F096688Metagenome / Metatranscriptome104N
F098669Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103688_1004444Not Available1073Open in IMG/M
Ga0103688_1005781All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis960Open in IMG/M
Ga0103688_1006149All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans932Open in IMG/M
Ga0103688_1008684Not Available804Open in IMG/M
Ga0103688_1011732All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae703Open in IMG/M
Ga0103688_1014108Not Available646Open in IMG/M
Ga0103688_1015766Not Available615Open in IMG/M
Ga0103688_1018491Not Available571Open in IMG/M
Ga0103688_1019769Not Available554Open in IMG/M
Ga0103688_1020403Not Available546Open in IMG/M
Ga0103688_1020517Not Available544Open in IMG/M
Ga0103688_1021022All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda → Lottioidea → Lottiidae → Lottia → Lottia gigantea538Open in IMG/M
Ga0103688_1021471Not Available532Open in IMG/M
Ga0103688_1022066Not Available526Open in IMG/M
Ga0103688_1022078All Organisms → cellular organisms → Eukaryota526Open in IMG/M
Ga0103688_1022493Not Available521Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103688_1004444Ga0103688_10044442F088935MTSIGGLDVAFGARMQVVRTNVMCLALATTGLANSTTVPKYILNTYKEALKGTVIEPDFLFIYEIADLTGSGYTTAAVANSLFNQDNSGDGTADVTALEVNGVLRAIAQCPLAVNSAFADTTAAHAADGAAHTAHNYYDINGNLALESVLSLSAFALDDTAADQAATGVFSNV
Ga0103688_1005781Ga0103688_10057812F004094VGGKELGHAESTDAFGSKDLGHLLVGGEELLVLRILKIVLLDVGPQLLNALSARGLLLANNVGQLGAELHGFGETGSLRHVDSLGLLFG*
Ga0103688_1006149Ga0103688_10061491F072408PAPADAYCPTQEDFGSDGGVTWHGNGWTIVGGGGVHSKTTWNLNGGYIEFEMDTSAAQGGVNNNLYTTSPDNVQPRNECDIQGQGKPSCMEMDILEMNGNCMAASTVHTWPNHNGGCDRGGCASSMKIGGKFHVKAEFSTGGWMTVTLNGQKNEHYQPSPSKNSQNFVVQTMNSKGAQIQSSQWVGWVPGASQCPGGGNLGASRFTVENLVVKGSVVQGPEPKKCGQMMNSSTVLV*
Ga0103688_1008684Ga0103688_10086841F025643LTETVKLNLLEVGAGSGKLEFSGSGIEGFTCSEKTYTKSGTAITLSDLSDCLPAHVAVSKTLYCSDSDTMKVTVKDDTVPIPVTATLKKVACAGREVFASCTGDADPVITGETCYKGSAGALGLTETVTVKVKDFASSAGHIDFSGDGIEAFTCSGKTFTKSGQDITFSDSSDCLPSGIVVSGVKYCSDSDTMKITVKD
Ga0103688_1011732Ga0103688_10117321F006651YAATGEYGAKNCKADCLLGWCKSGCLSCTLPAQKTLATCTGFAAQTADPCEEEVKEEVAATGACTSGDQSALADPQNVGDKANTCGTTAFNIITGKFDHDKFNSCFTSSIGISSTCSECYAATGEYGAKNCKADCLLGWCKSGCLSCTLPAQKTLATCTGFTAATADPCELATV*
Ga0103688_1013612Ga0103688_10136121F000070AVVRSDLERNVADTEARLKNDIRQKQQESFEKIASVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVEIQKSSDAVRKIEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFEDLKHCAASLTKGVVKFAQVVGVFPGPRFDDAEGMDQSEADVELLGWEECAENMSFRVDKAWRQRCSQRFRNILDMIAKKADHS
Ga0103688_1014108Ga0103688_10141081F005390EKFIHSSCTGQSSGWKGACTHLLFADGPKGYLYLADESKCCTTEPKQSSFNVTGPPPGGSETLAPSQGTFWNTFTYKGEVDFNGVYYKGKAKYYVLTGVNEPVREFWYFTDLDGKPVQQGEAGTGPTDQGYPVSIGHTIWHDYDPSSLDSSAFDTSVFDIPEVCKKTSTTCAFP*
Ga0103688_1015204Ga0103688_10152041F073166GGGIVSGLPSQLIYTNTEWKIVGPSLVLGAMITLAGRYISGITPRNPWLNPLVLILACGVGWFLAFQHGVNGGFYIWPVESGVIGGFFVGIGLVIAWRLKRIWMIIMLTTLAGGLGGLVFTLVGFQLLFISWQGILLLGIGIAIQIDSRKSSIEE*
Ga0103688_1015766Ga0103688_10157661F088224GPVIFTYLNSAFGYDPGCNDQCTAPVTCGPPDENRNAAGMALLFTSSVPWLVCGALYMHFFYPHDMERIFERRRLEAEAAGSALNTELVS*
Ga0103688_1018491Ga0103688_10184911F096688REIVFYAIGRMSLGQIMRGKFMRIIKGLAVVGYASIMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWVNWRRQNARNRGIDVAGHAQGGGDS*
Ga0103688_1018522Ga0103688_10185221F000073NLKVTRTFLSWMDDHSKLRTVCEEGKGKLQWERDIPQDALDNLQNLANTDFKANLGKIIHDIYQTAHTMFSDMPQGDHKKRAKYRFASKTLMRILPEPQMSMINGLIEKKTISLDLYEILGKCTWKLV*
Ga0103688_1018594Ga0103688_10185941F000155SAVGVGCLRRAANQYDSMNEDELLVSLESTLSSAQRSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0103688_1019769Ga0103688_10197691F005390LEVYWSEKFGAEKFIHSSCTGRSSWLDGPCVHMYFADGPVGYMYKQDESKCCLTEPTSGGSGPVETLSPSQGTFWNTFTYKGEVDFKGVNYEGKAKYYVLTGVNEPVREFWYFTDLDGKPVQQGEAGSGPTDQGYPVSIGHTIWHDYDQSSFDTSAIDESVWAIPEACKTTTLTCAFP*
Ga0103688_1020403Ga0103688_10204031F032157MAFMKAIKTMKVRKSKKVSFIAKGPRAKAVVFLGSGSATKTSGGFKKGDLMKSKRGKIVTKSQHAAGKKAFKNIKAWTTAVTKARKDLNITGFVAVKKGTPLYKAAKAIIGA*
Ga0103688_1020517Ga0103688_10205172F054098ELIDVIVKEVEAANQSNSQGAADTDVQAEEDQAKEGAWELFTG*
Ga0103688_1020966Ga0103688_10209661F092158GHYEGSVPFILGMNLIFPGDGTMNFDQNVKVAKQEIKCPTEKISETASAVTFPNTGTTGDCMGDALRAQKKDVSKFTIDINSDGSLTFHSDGWPDLKLTKKTEIIVV*
Ga0103688_1021022Ga0103688_10210221F065401RDWDEALAPSKMVVDSVSLNSWLHMWARMCKGAAGIDDFPIWVQLIPRVIFKVICSREGGDVISRESLKNFYKNFTGLRVETRQKVATDGYRSMSANGDYELDYSSYKLLFSNFLLGRTIYGPGKYVFGAFDNRDMEEKYKIVYE*
Ga0103688_1021471Ga0103688_10214711F098669METATRGRKQKWRLKEAEGLGRKRRIEEAERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPCLGRVFFN
Ga0103688_1022066Ga0103688_10220661F092198LVGHLTDIHSHISYLCVTGGGVHAVIDAGSKESGNCTWKIPAGHTGYVHGFWYDVDSVAAGQGTAEIALQVAHAESSGVANSETWRTIAKVTLVEQDSDVVAASGGNGGTNAGSFSFPGNVPFVIPAKAMVRLAGKALSTAVAATCGFSMSVQGSGAGTTVTES*
Ga0103688_1022078Ga0103688_10220781F004471MNKMKLAGQEIKVAGTKIDNAIIKKEDTKSRDVRQAKENWRFSKDKEGKFRRIIMSRLRTLSSNVLVTNLPEGKSDQLKKNIIEAGYTVKSITEGSQRPDHKPEDKPSTGYTMAHVELASVEEAIAAVANLHNTWPKKFGTKKNDKFGNARGLVFSLTGTKKEKPLEKSKA
Ga0103688_1022493Ga0103688_10224931F052865KHMDLRGLGVVVLGLGLPSIATWMANSGVGSRVMSYVDMVPGMTTKYGKAVIAVGLTAGVSYLAAHFGAISAAEALTANMIAMGLVSVGLLKTMSLPVGQGLVDNLPAANFGGLAGSASYGYIGNYHEGVGAEMLPQPQSQQLFGVRANIF*
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