| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008782 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117950 | Gp0126186 | Ga0103597 |
| Sample Name | Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 125m_>1.6micron |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Georgia Institute of Technology |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 2324584 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities Of Ocean Water From Oxygen Minimum Zone Off The Coast Of Manzanillo, Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities Of Ocean Water From Oxygen Minimum Zone Off The Coast Of Manzanillo, Mexico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine oxygen minimum zone → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | North Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.9 | Long. (o) | -104.5 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000077 | Metagenome / Metatranscriptome | 2584 | Y |
| F000267 | Metagenome / Metatranscriptome | 1412 | Y |
| F003052 | Metagenome / Metatranscriptome | 510 | Y |
| F005881 | Metatranscriptome | 387 | Y |
| F093215 | Metagenome / Metatranscriptome | 106 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103597_10361 | All Organisms → cellular organisms → Eukaryota | 756 | Open in IMG/M |
| Ga0103597_10499 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales | 675 | Open in IMG/M |
| Ga0103597_10846 | All Organisms → cellular organisms → Eukaryota → Sar | 576 | Open in IMG/M |
| Ga0103597_11195 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea | 513 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103597_10361 | Ga0103597_103611 | F003052 | GSSAHQVCSLPIVLFNTMRAVSLAIVGVAAAQNPDQPHLAQAWIAKSTGDGLPGAVGDEAYLVVDNEAHHLWDYGTDGQKLWTCPKGNPSCVAYYLKLNGPNCCKCDQNIGKPKPWDIPESGFLTKVNFVAYEDTTELYDHQVKGAEHWYESTGIPQVVSITYDYFLHREDSGDVVSHRIDFDTTVQQSGSILYGNFSVQHDIDAHRERFAVPNECKGNILDCCDSRDEIMAKWFKHDHAVGQGKKAMTV* |
| Ga0103597_10499 | Ga0103597_104991 | F005881 | MRGAATLALLFGADALEHRVNPIRKVVTMLQMMQNKVEADGAKAEAIFEKSMCYCENAETLLGGAITAAENKIPQLESGIKEDIAEKKQLEADLKAHKADRAAAKAAIEKATGLREKEAAAFAKEKGDSETNIAALAKAIPAIEKGMSGFLQTNSASVLRSLSVSMDMSSVDREMLASFLSSKTGYAPASGEIVGILKQMDDEMKADLASATE |
| Ga0103597_10846 | Ga0103597_108461 | F000267 | RPNKIEALTASSARLNTEIKNLEKEVAENQEALDQATAIREKELAEFNAEEKDSLQAISALKSAITVLSKHHGGALLQMPRSHLETIASTIQYQMQKHAGVLQGVLTHTERKAIAAFIQAPQDYFDASPTFKQSYAPQSGEIFGILKQMKESFESNLSDSQKEEMANQKAYEDLKAAKTEEIKAGQDQIDT |
| Ga0103597_11053 | Ga0103597_110531 | F000077 | DMKARKGTRAKEHADYAAESTDYAESVSALERAIHTMSKQDYDRPGSAAALLQVSQDSRMPEKAKDVIAAFLGYSDGSDDDGFGDYAAPEANAYEFQSGGVIEMLEKLLDKFIAERTTLEKEEMNSKHAYDMLMQDLKAQIAQATQDRDEKSEFKAETLQSKADAKGDLEDTTSTRDAD |
| Ga0103597_11195 | Ga0103597_111951 | F093215 | AGERCIDKVVMVEETEYDDVVTCKHSYSEKCHTTYTTDFEPQQEEDCEENFVKSCFIEYKKVASEEAVTFCHTPILLEGDGPEVCQTVYESACTTRYQEHDVDEDRVECETIQEEKCEDVTQGYTTEQKCTKWPVQKCKASNENVKKYSPETECKKVPREICGAGTTQVP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |