| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008692 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052848 | Ga0113555 |
| Sample Name | Human stool microbial communities from NIH, USA - visit 2, subject 809635352 SPADES reassembly |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 175694558 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F047126 | Metagenome | 150 | N |
| F058154 | Metagenome | 135 | N |
| F077320 | Metagenome | 117 | N |
| F078004 | Metagenome | 117 | N |
| F078822 | Metagenome | 116 | N |
| F080163 | Metagenome | 115 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0113555_1000037 | Not Available | 63538 | Open in IMG/M |
| Ga0113555_1005400 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2588 | Open in IMG/M |
| Ga0113555_1012303 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1747 | Open in IMG/M |
| Ga0113555_1019136 | Not Available | 1464 | Open in IMG/M |
| Ga0113555_1069728 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74 | 576 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0113555_1000037 | Ga0113555_10000372 | F080163 | MKTIKFLQESFETKERFQQEISFKYSYNRDIVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDANQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSILIQGFYNRDLSFSTKLESEILDSETELLQEKLDLIREEICKLIGVDPNLEKQGHKDNYVFNLNINSDNQIGFFLQATEL* |
| Ga0113555_1004350 | Ga0113555_10043504 | F078004 | LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF* |
| Ga0113555_1005400 | Ga0113555_10054001 | F058154 | MKSGIWRTYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALDVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES* |
| Ga0113555_1012303 | Ga0113555_10123031 | F047126 | VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNLAVLVEIDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC* |
| Ga0113555_1019136 | Ga0113555_10191363 | F077320 | MKRKGMHRRRKLVLLAVLLIMVGIAVWRIWQTPRPVVLHRQDAWLSSAEPEMVDVLPDNTFTAELPEKIDGRLLYIRDYSASGHYQIVWEGVSAEAAEVYLNALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLNDER* |
| Ga0113555_1069728 | Ga0113555_10697281 | F078822 | VVLFVKHFFDIFLSFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |