| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008652 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117953 | Gp0126213 | Ga0103624 |
| Sample Name | Microbial communities of saline water collected from the North Sea in Germany - HE327_15 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Goettingen Genomics Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 4177836 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Acartiidae → Acartia → Acartia pacifica | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities Of Saline Water Collected From The North Sea In Germany |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Unclassified → Unclassified → Unclassified → North Sea → Microbial Communities Of Saline Water Collected From The North Sea In Germany |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | North Sea, Germany | |||||||
| Coordinates | Lat. (o) | 54.449 | Long. (o) | 8.22 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002258 | Metagenome / Metatranscriptome | 577 | Y |
| F064579 | Metagenome / Metatranscriptome | 128 | N |
| F101275 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103624_100005 | All Organisms → Viruses → Predicted Viral | 4277 | Open in IMG/M |
| Ga0103624_100323 | Not Available | 746 | Open in IMG/M |
| Ga0103624_100377 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Acartiidae → Acartia → Acartia pacifica | 710 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103624_100005 | Ga0103624_1000052 | F064579 | LLSSALQASEKDDLLNTSSDIVNQITTGVTLVGAATEYAYQGDALSSGTLSTTAHISEAQVDAYNQALDNFVNNYQPYGDVKAVLENKAMGELELMDEAIGRFTEAVVDMSTVLQVNERIEEAVTPQQEAEVQTFVTESASVLQVEQETVDTYNQSVDEIETHANNASAYLAVAGSEEAVAFLEQGIENANTTAEQTNIFYDANAQWVAMGYNTTRNLTAVYLNGNDNMGLDLYITEADILAAGSESEFFKTSPVSQGYKCFMYNEGCNEL* |
| Ga0103624_100323 | Ga0103624_1003232 | F101275 | MTRLLGIFKSLGCFLLLSDVEPFKYEYRIGLETLVVRTLNQWALHVGELTPARTLTLKCLAWGVWLQRLNLNRLAGVCLNGG |
| Ga0103624_100377 | Ga0103624_1003771 | F002258 | SIKLSNPSLRKMMLLMLLVPCVLGGTPMPRDPIDVKPLGSGTGNDQYKPIDDAYYTPNEVYKAGDKDDCHPVEKVVYADECVPYVEKTCYTQQKELCKDVFEKNCTAVIDEFEERECFDVTELVCQLAETIQYEMVEEQYTVQRCTKVNDRVCDTVYDLAVTTKDDFQCVDIEHQYCWEEEKVVKDRTCIFSVDFDCGKYQPKDGKGSVTCQKVPTKKCYDTPRKVKEELCQPRTS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |