| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008600 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117987 | Gp0126523 | Ga0103934 |
| Sample Name | Planktonic microbial communities from coastal waters of California, USA - Canon-38 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Hawaii |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 2224230 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 9 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 2 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Planktonic Microbial Communities From Coastal Waters Of California, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal water body → coastal sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000237 | Metagenome / Metatranscriptome | 1498 | Y |
| F003081 | Metagenome / Metatranscriptome | 508 | Y |
| F023489 | Metagenome / Metatranscriptome | 210 | Y |
| F030108 | Metagenome / Metatranscriptome | 186 | Y |
| F031121 | Metagenome / Metatranscriptome | 183 | Y |
| F047996 | Metagenome / Metatranscriptome | 149 | Y |
| F058437 | Metagenome / Metatranscriptome | 135 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103934_10174 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 1186 | Open in IMG/M |
| Ga0103934_10392 | Not Available | 928 | Open in IMG/M |
| Ga0103934_10976 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 674 | Open in IMG/M |
| Ga0103934_10986 | Not Available | 671 | Open in IMG/M |
| Ga0103934_11685 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 549 | Open in IMG/M |
| Ga0103934_11704 | Not Available | 547 | Open in IMG/M |
| Ga0103934_11972 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea | 521 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103934_10174 | Ga0103934_101741 | F000237 | LILFIPSKITCLFCHES*DTDSGENTYEDKSGSYVS*FYDAFLKEIQDA*Y*TTFVFVYFFMHHFQGATVNYSLFER*NIAELDEIRFYAVAPH*YFRPMMGCLTISPSHYEGLS*FGL*LLLLAALPIINN*YNTSHTYLPVIPVQSSLLQTSGFIIFMFSMYTVASMLPCGRYYYEPEGGYVGNP*VKVSFQYLFLYLG*LVHNFDLIEHYAFNFIQTFTRQCTKLYDRANLKSKASLINYSQIENQKLTTSIRFENTNYNLKLFN* |
| Ga0103934_10174 | Ga0103934_101742 | F003081 | MREEMFNDTRFGVEVFLMHLRGVDTLMLLSYMHILKKIYLKNYEPV* |
| Ga0103934_10212 | Ga0103934_102121 | F023489 | NRCDCGANATKIVSATRHILDGASGDFPGSHMKWVREHENAGQTSKES* |
| Ga0103934_10392 | Ga0103934_103922 | F030108 | MLNKITYDNVVKGLIAISLLFMAFGAKAADFSGSVGVSSDNYFRGVNISDGAGYSVKGLVDLDNGIFAGASVMSLDDRTDLMTKAVIGYGRDLGGVKVDVAYIDYGYQGLSLDGWEEVAVKAYFDKFAVQYSKGLDNAGDTYIVSSDALEIVDVAYGDSDLTGSWFEVSKSFDLGGGSLNVGD |
| Ga0103934_10976 | Ga0103934_109761 | F047996 | MTDVQTEEKPTLVFEDNNYVIEDLSEKAQYLVGQLQDLAQQGNATRARLDQIEVARPGFTDMLRDELAAEPAEG |
| Ga0103934_10986 | Ga0103934_109862 | F058437 | ASSGAADVAAREEAHAIIRALNQIEVTLDAALAAEALLDRKQRK* |
| Ga0103934_11685 | Ga0103934_116851 | F003081 | MPEPGLVIELREEMFNDTRFGAEVFYMHVRGVDTIFVLSYLHILKKIYLKNYVTAESDG* |
| Ga0103934_11704 | Ga0103934_117041 | F031121 | AVGVWGNNGGKGQLWNVVYLDKAKGPQVKGVSKDFGFHINRPFYLVSELPMNKVAEMLGGTNMVLKRWRKNQRQQQFFFDEVTKTVRNNYWKNYCLDI* |
| Ga0103934_11972 | Ga0103934_119721 | F003081 | MPEPGLVVELREEMFNDTRFGAEVFYMHVRGVDTLMLLSYMHILKKIYLKNYVISESDG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |