NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008583

3300008583: Planktonic microbial communities from coastal waters of California, USA - Canon-34



Overview

Basic Information
IMG/M Taxon OID3300008583 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117987 | Gp0126520 | Ga0103931
Sample NamePlanktonic microbial communities from coastal waters of California, USA - Canon-34
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hawaii
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size2087875
Sequencing Scaffolds4
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium → Chromobacterium phragmitis1
Not Available1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePlanktonic Microbial Communities From Coastal Waters Of California, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000237Metagenome / Metatranscriptome1498Y
F003081Metagenome / Metatranscriptome508Y
F010914Metagenome / Metatranscriptome297Y
F022222Metagenome / Metatranscriptome215Y
F076004Metagenome / Metatranscriptome118N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103931_10229All Organisms → Viruses → Predicted Viral1030Open in IMG/M
Ga0103931_10567All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium → Chromobacterium phragmitis783Open in IMG/M
Ga0103931_11371Not Available576Open in IMG/M
Ga0103931_11462All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea564Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103931_10229Ga0103931_102292F010914MIYNILVEKNGKFVATGETVECEFEETQAVIDEFQAERGCCCALEAVSE*
Ga0103931_10567Ga0103931_105671F076004MDTENTVALSNRNGIQTFVQNVEFDRDGRHYDEPCLLMCRGFMGVRNMFVFPLCDAWTVREPDFFKATMQDAAATLFVSPTKNDEHVVGDMILHDIDTIIAWRPDDDATHDHALMKKEVERSGMFLQVNGQTL
Ga0103931_10732Ga0103931_107321F000237DQLTRLMTLHYFVP*YYLYLVKLHILFCHES*DTDSGENVYEDKSGSYVS*FYDAILKEVQDA*Y*VLYVYVYFFIHHFEGVTVNYFFFER*NIAELDEIRFYGVAPH*YFRPYMGILVISPTHYEGLM*MGLFLGLLAFLPLVYNLYNTFSKYVATIPMQNSILQTTTFIIFMLSLYCANSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLG*IAHHLDLIDHYIFKFTQVLLR
Ga0103931_11371Ga0103931_113711F022222MKINAIIGTQIKSVKAGIFSALASIRLLATETVATEESVYAMAA*
Ga0103931_11462Ga0103931_114621F003081MPEPGLVVELREEMFNDTRFGAESFFAHVRGVDSLMLLSYMHILKKIYLKNYVTAESDG*
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