NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008577

3300008577: Planktonic microbial communities from coastal waters of California, USA - Canon-6



Overview

Basic Information
IMG/M Taxon OID3300008577 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117987 | Gp0126504 | Ga0103915
Sample NamePlanktonic microbial communities from coastal waters of California, USA - Canon-6
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hawaii
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size1086171
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus tauri1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePlanktonic Microbial Communities From Coastal Waters Of California, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011139Metagenome / Metatranscriptome294Y
F019998Metagenome / Metatranscriptome226N
F030104Metagenome / Metatranscriptome186Y
F051119Metagenome / Metatranscriptome144N
F054876Metagenome / Metatranscriptome139N
F064638Metagenome / Metatranscriptome128N
F074867Metagenome / Metatranscriptome119N
F091607Metagenome / Metatranscriptome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103915_10076All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus tauri1645Open in IMG/M
Ga0103915_10150All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata1296Open in IMG/M
Ga0103915_10658All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus765Open in IMG/M
Ga0103915_10711All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae742Open in IMG/M
Ga0103915_10734All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae731Open in IMG/M
Ga0103915_10800All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium710Open in IMG/M
Ga0103915_10947All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes663Open in IMG/M
Ga0103915_11078Not Available634Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103915_10076Ga0103915_100761F054876MENSISLGLLHGLVYGIVPAAPWFVALKRYLLEGKERGQLAVAGTIAGQVSLLALTFFGWNQVLWIWYYFEPALIILGTMAVGRCALDCWVEQTSSLQTEPVPLANKKEGFYYFLVNFGLMFCNPAHLEGSQTLFSSIPGNRYFYLIAFTITYSGIILAFWATLGYRIFGKAYAGLGPQQTLTRYRIRRVAVGMVAALFIQFANCTPEALVVYHFDSLFTYTPFEQFKHHKTRGYIWEPVTNGSIGFSRQSTRTTNKQGILMDQEEKADITHKSMWNNQVRYDECNQTRERELDNDEWNEEASFHEFGGVNQATLHARLVPFNLYMVPKWERQENKDFVLTLRKIRDEMDEKLLSSGNSYAQNASLPFSDEWDVELDYIINPSALAEKAESKGAYKDMQKFIRSTKWTSNHLHLGNGFDTEASYAKLHKLPAEVRLPWHYPAVKPLETKFLPPASRQTPEEIESLNQQIQANAEFLANEPDRIQPDIYRRLSEYRMSRKTTPRPFDAEREARLKAESEFRRNTYSIPD
Ga0103915_10150Ga0103915_101501F011139MGLFLGSLAFLPVIYNVYNAMHKYVATIPMQNSILQTSAFIFFMLSLFCANSMLPCGRYYYDPEVGYVGNP*
Ga0103915_10658Ga0103915_106582F019998YKVNTVVGQVVNLYEVGTTTTASLDYAASANAIVVGFTTLAWQPLRIIEARRVDLCSDIEVPLMIVGKFDYERIPNKAMASIPLWLYAQTMIAETQVFVWPPTAYANWAIGYSFERRYQDVDSGINSMDFPPESYESLRYGLAARLGDEFPIDPQRQAMLVGNAAGYFTAMRQASSGNASVKFGVRG*
Ga0103915_10711Ga0103915_107112F074867MSSRGITDIILNGEAFELHPTFSNLDKLETVLNKGAIAYLRQDLSRVAFTTGDPVSIIQVCAVAANIRKFPSWWTRDGVGEAVISAGLVGITTSVTHFLAKALTAGTETDIKTVGSESDEKK*
Ga0103915_10734Ga0103915_107341F051119MRISEAFEQFDALRFANALGLEYGVVCKWRDREQIPVYWRTRFVNLMNNHNVAIKLHDLAGWIK*
Ga0103915_10800Ga0103915_108001F030104MTLLTFDDDQDEIIELVDSSFFYVFTIIVIYLIYKHSIHYFAFLEASVSEGRSVNFVTVQFVKDFLATFSLMLRFYILLFRMNVYDTLEDFFDSYYIFIGDFDDDEYLNELFLSIHVTILFTFDNH
Ga0103915_10947Ga0103915_109472F091607MSLELQISELNATIKTLNENILLLLGSKEQHSKVECSPIEPVNLGQTQQQTFLPEVAKSDEYTRGQLQTLCLEATKRNAANRDIIKAIMSVTLKPARLAT*
Ga0103915_11078Ga0103915_110781F064638DMSKFKKKLKKAALAGIALYGASKMLGAQKTAAPIGAPASAKTPSSSKINAKKRVIDLGPDTKNLVGKTTKTTVDVNASGKEIEEKASKIKATQKKINKAVVKRKEAGMLSPTMPKSESQYDALTKNNSGLDMFGCAKKGKMIRARGGGLAKGGMRPTKLY*
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