NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008509

3300008509: Freshwater microbial communities from catchments in Singapore - Site BB



Overview

Basic Information
IMG/M Taxon OID3300008509 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118189 | Gp0131420 | Ga0110930
Sample NameFreshwater microbial communities from catchments in Singapore - Site BB
Sequencing StatusPermanent Draft
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size118806421
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis → unclassified Methyloversatilis → Methyloversatilis sp. XJ19-131
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium1
Not Available6
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter → Acinetobacter sp. CIP 64.71

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Catchments In Singapore
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities From Catchments In Singapore

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → drainage basin → fresh water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationSingapore
CoordinatesLat. (o)1.3Long. (o)103.8Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004260Metagenome / Metatranscriptome446Y
F007855Metagenome / Metatranscriptome343N
F007861Metagenome / Metatranscriptome343Y
F009805Metagenome / Metatranscriptome312Y
F019123Metagenome / Metatranscriptome231Y
F022892Metagenome / Metatranscriptome212Y
F027444Metagenome194N
F031850Metagenome181N
F050228Metagenome145Y
F091594Metagenome / Metatranscriptome107Y
F100421Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0110930_1040556All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis → unclassified Methyloversatilis → Methyloversatilis sp. XJ19-13929Open in IMG/M
Ga0110930_1049384All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium646Open in IMG/M
Ga0110930_1062008Not Available642Open in IMG/M
Ga0110930_1062952All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage516Open in IMG/M
Ga0110930_1112170All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes772Open in IMG/M
Ga0110930_1120232Not Available512Open in IMG/M
Ga0110930_1131147Not Available544Open in IMG/M
Ga0110930_1144968All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter → Acinetobacter sp. CIP 64.7513Open in IMG/M
Ga0110930_1189541Not Available512Open in IMG/M
Ga0110930_1203605Not Available638Open in IMG/M
Ga0110930_1229731Not Available539Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0110930_1040556Ga0110930_10405565F091594MSENKITHYCLGNGEPKCGGCKQEMNWQTLNQMPDALRKTLQDQAQRINDTNCILSGRPWYVGA*
Ga0110930_1049384Ga0110930_10493843F009805MVIDIAVGEWMNTLQNRMDSAMDGDCFCLPTPMHLHAFFLVKEQSFPNKDLKVELKQLVDA*
Ga0110930_1062008Ga0110930_10620081F027444MPAGRSGRRQIPPQDVARYWQSRAAGMAIKDAAAVAGVHVNTASKWEAKRRKALAEIKLAEVEVGAVRKKQGGVQAEAWKHAMDVADLPPVIPYER
Ga0110930_1062952Ga0110930_10629521F004260MAIEDRLLGKLKAEQQVFALEALKRPVERDAFEYGYRVGMVAGYEAAIKALLDLLDDERHGD*
Ga0110930_1112170Ga0110930_11121703F019123MVDSKPLTQEEIIKIYKAAFGNGNAVLTLDRIFKFARLLEQAHGVKDG*
Ga0110930_1120232Ga0110930_11202322F007855TDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREAAWFGWFAKKYDGASHAERAELMKKYAKIGDVWGVVSFFLLSSEGYLQILSDYSKHLTKMAQGQ*
Ga0110930_1131147Ga0110930_11311471F022892KVNKIINPIANNIGVFIVINPPYNVAIQLKILIPVGTAIIIVAAVK*
Ga0110930_1144968Ga0110930_11449682F007861CNVTYGIIRITMVDKTLEEVKRGEQASKILENPIYIEAVTKVKESLISSMANSPLGDEKTHNRLVIALQLLNQINKQLTDVMQTGKFAAIQTDRPKFKIFG*
Ga0110930_1189541Ga0110930_11895411F050228DVPLVNPDRDKAWEAFIKRRDVKAMMKGKEDFKFPLDGSYDLWCIVWEKAWHEGFVEGWKAAGGKTREP*
Ga0110930_1203605Ga0110930_12036051F031850MFDIMHQDDEDYYNAKVKAVVFINQDNSITVKFTGFEDKEHSAIFSSWLMMLLNIENAIINDSKSKAIH*
Ga0110930_1229731Ga0110930_12297311F100421LNSSFQGAIGPNIIFREEFYPLRFAEDGTMPAPEIELLLPDSGYSTPNATRQTVINPAYASAPIGVAFLIGYNPYEQIDVGPPPAEFTGASINGKRFNQLTWNGEVRLTDNVLVNYGSNNLDTNKYGEFLQLIADTVLGIIGNTPRNVIPIIYRRQIAPSLFV*
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