| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008465 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111382 | Gp0136554 | Ga0115360 |
| Sample Name | Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC5B |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Shell Corporation |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 225578278 |
| Sequencing Scaffolds | 22 |
| Novel Protein Genes | 22 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales | 1 |
| All Organisms → cellular organisms → Bacteria | 4 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae → Halieaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → unclassified Acaryochloris → Acaryochloris sp. CCMEE 5410 | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Thalassotalea → unclassified Thalassotalea → Thalassotalea sp. ND16A | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine cold seep biome → cold seep → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 27.4 | Long. (o) | -93.2 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005815 | Metagenome / Metatranscriptome | 389 | Y |
| F009686 | Metagenome / Metatranscriptome | 314 | Y |
| F031502 | Metagenome | 182 | Y |
| F034978 | Metagenome | 173 | Y |
| F037736 | Metagenome / Metatranscriptome | 167 | Y |
| F038478 | Metagenome / Metatranscriptome | 166 | Y |
| F039402 | Metagenome / Metatranscriptome | 164 | Y |
| F040581 | Metagenome / Metatranscriptome | 161 | N |
| F048391 | Metagenome / Metatranscriptome | 148 | Y |
| F051933 | Metagenome / Metatranscriptome | 143 | Y |
| F053659 | Metagenome / Metatranscriptome | 141 | Y |
| F065254 | Metagenome | 128 | Y |
| F078289 | Metagenome / Metatranscriptome | 116 | N |
| F078733 | Metagenome | 116 | Y |
| F082105 | Metagenome / Metatranscriptome | 113 | Y |
| F085223 | Metagenome / Metatranscriptome | 111 | Y |
| F088437 | Metagenome | 109 | Y |
| F091298 | Metagenome / Metatranscriptome | 107 | Y |
| F092080 | Metagenome | 107 | Y |
| F101182 | Metagenome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0115360_10001132 | All Organisms → Viruses → Predicted Viral | 4115 | Open in IMG/M |
| Ga0115360_10001405 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae | 2636 | Open in IMG/M |
| Ga0115360_10002174 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 2236 | Open in IMG/M |
| Ga0115360_10004128 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales | 1708 | Open in IMG/M |
| Ga0115360_10005500 | All Organisms → cellular organisms → Bacteria | 1482 | Open in IMG/M |
| Ga0115360_10010320 | Not Available | 1147 | Open in IMG/M |
| Ga0115360_10012437 | All Organisms → cellular organisms → Bacteria | 4256 | Open in IMG/M |
| Ga0115360_10012851 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 926 | Open in IMG/M |
| Ga0115360_10017361 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont | 771 | Open in IMG/M |
| Ga0115360_10017715 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 761 | Open in IMG/M |
| Ga0115360_10017892 | All Organisms → cellular organisms → Bacteria | 757 | Open in IMG/M |
| Ga0115360_10026819 | Not Available | 674 | Open in IMG/M |
| Ga0115360_10027279 | All Organisms → cellular organisms → Bacteria | 683 | Open in IMG/M |
| Ga0115360_10027327 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae → Halieaceae bacterium | 575 | Open in IMG/M |
| Ga0115360_10030361 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 533 | Open in IMG/M |
| Ga0115360_10073734 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → unclassified Acaryochloris → Acaryochloris sp. CCMEE 5410 | 570 | Open in IMG/M |
| Ga0115360_10079524 | Not Available | 555 | Open in IMG/M |
| Ga0115360_10081864 | All Organisms → cellular organisms → Archaea | 666 | Open in IMG/M |
| Ga0115360_10083897 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1639 | Open in IMG/M |
| Ga0115360_10084585 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1199 | Open in IMG/M |
| Ga0115360_10086493 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 513 | Open in IMG/M |
| Ga0115360_10273664 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Thalassotalea → unclassified Thalassotalea → Thalassotalea sp. ND16A | 527 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0115360_10001132 | Ga0115360_100011327 | F034978 | MNLEINATKDQIKELKSSILWADITNELNNWKEGFNAEMMSIVDTSADSNPSTASVLLHMGDLNGRQKAVDYMLGILDVFLSIQETNKTDEIDEIEEEEINNGK* |
| Ga0115360_10001405 | Ga0115360_100014054 | F038478 | VHKEIMIDKTLNETLQKKHPDFTGELIDFNFGPNKIQIQATIVKELLEIDEEKATQAFEGLCQSFSEVCSRYHIKFDPIDLFILVDDELKRGTSTKFRDVNNGNLFAEILIPTKDFQTHEYWKYSFLHELGHSWFSIEFSPEDMKYGHEDLFIDLVVICTFRKILPSYKRVYQEVRKHRTYFLTQQSKRFIGKELYRQILHDPEAYLRDLQQKIDSAHT* |
| Ga0115360_10002174 | Ga0115360_100021742 | F082105 | MTALIWRDQTRCTVQPNXTVQRAVASTIMRIDSAGSGRVNDKK* |
| Ga0115360_10004128 | Ga0115360_100041282 | F048391 | LTNNGLFSTVLLGKVSAYQFIGLEGDKMNDSKSVGPINNLDYLEELLDEGYVIKGPRKDPSRDLISFKAFLKKGKEFVPELWLSNMGYEFIEPGTFTKGHRIAYKIIDEFPDERFNSNYTLVKGKRKIPLY |
| Ga0115360_10005500 | Ga0115360_100055004 | F031502 | MSHRRSLSRERRRNEDMPGFPFKDSNGVTIKECRRRIPGRRMIKIQGKWIDELAIGMRPCQVRE* |
| Ga0115360_10010320 | Ga0115360_100103201 | F065254 | DKFFHSLWNAPVALNKGFEQAEKASVATESLLWGCXITNFKATLPFNRMMQFFAAFKKRPRGPAR* |
| Ga0115360_10012437 | Ga0115360_100124371 | F091298 | MSSAARLRVTSPVQVLEHLSLGEPIQDTRVAGLLDLDPLVVSRWLCGEDLRGIYQPILLRHCALDGLDLEGRTFYEMVELVGCRIGVAHCTRAYFYSSLLIEDCVFEGDFEGRGIQSDGRMVIHNTVFTGWADFSTINLRGRVDLVDLSFPGGTNLLHVLVNDLHELLGGEIRLSGCQFRAADV |
| Ga0115360_10012851 | Ga0115360_100128511 | F085223 | MISVNETKQKRQNRTVTLHLGNTLAEYQEMISTEEGMQTLIQQVEIADSLNWGHLADGHHEGCPRCLRLTHHDSYARWTKHFDGTQELVTIIRVRCLDCEAVFTIQPSFIVRYKRYDTDAMEKFMVLLFITEHSYRMAGVGQALGMDIHQEGTWVALEKAGQDAISPTSLWGLVQWLGQLSPAQLNLALGVEPPTHIIEDEKHMKECGE |
| Ga0115360_10017361 | Ga0115360_100173611 | F037736 | VPYRVQLDGLQILWLLANPLWTHGIGESGSKTITGWLLIGAADANHIWWLNTNPLTSLLLHLNSYRIRHLPFGFLTAS* |
| Ga0115360_10017715 | Ga0115360_100177151 | F091298 | LRVTSPVQVLEHLSLGEAIQDARVAGLLDLDPLVVSRWLCGEDLRGIYQPIILHDCVLDRLDLERRTFYEMVELVGCRVAVAHFKQAYLYSSPLIEDCVFEGDFHGRGIQSDGRLVIHNTIFTGYADFSEVSLRGMVNLVDVSFPGSTNLLRVLANDSRERLGRQIRLDGCRLHAGDVPAGLDAARLGITPLIEGVEGDLRGAEGQGREFAGREEAGLVHVVAGR* |
| Ga0115360_10017892 | Ga0115360_100178921 | F092080 | MVLICIXIPYKGGKRMQDKRVTIRIPFEIWKALRELQTVGKISSIQQAAVTGMNKLIESLTWGEEDNQRDAAKKRVLNVLVKEKPLGNWEDIHKERTEADADRS* |
| Ga0115360_10026819 | Ga0115360_100268191 | F101182 | MXSYEEDLEYERKVDRISEQIEELMLDAILTALKKIKERNLSYSCVESRPQNDPYPF* |
| Ga0115360_10027279 | Ga0115360_100272791 | F065254 | QDDFFHSLWNAPVALNKGSEQAEKASVATESLLWGCPITNFKATLPFNRMKQFFAAFKKRPHGPALARRKGYNENCW* |
| Ga0115360_10027327 | Ga0115360_100273271 | F051933 | MPGFKHQTVFGLCLLLTVLAAVSVVCVAMLFIERQEIDLLQQNVTSLQQDNAVLRSQLDNYRSGLVMQQEAAARSSD* |
| Ga0115360_10030361 | Ga0115360_100303612 | F009686 | MNEREMFEQSFKRPKNYLQLSSKEKWVIDKKLGILDWMGKGLTKEDEERYYKHY |
| Ga0115360_10073734 | Ga0115360_100737341 | F053659 | MISVNETKQKRQNRTVTLHLGNTLAEYQEMISTEEGMQTLIQQVEIADSLNWGHLADGHHXGCPRCLRFTHHDGYTRWAKHFDGTQELVTIIRVRCLNCEAVFTIQPSFIVRYKRYDTDAMEKFMVLLFITEDSYR |
| Ga0115360_10079524 | Ga0115360_100795241 | F039402 | MXLTDYSDFEKEIDDAPEPKTLPRGSQVRARIVTVRDGVSDKNDCQWYMPVFDVPDDPTVVEFNDFFWDLADTNKLDAKQAQRAFYKFQKFAAAFNIDYSRPFSWVDDLDGLEGDVILGVKKSEEFGEQNSVSKYLK* |
| Ga0115360_10081864 | Ga0115360_100818642 | F040581 | MEFLENGNFNGIKFIGNGNVYNGYLNKEQTWKEYREWALXNIY* |
| Ga0115360_10083897 | Ga0115360_100838972 | F088437 | VDSHKKRACPHYPQPYDDGDDAPLLWVGALGTLPEEDHNKHSLKWYSFLGELPMEKFMVLLFITEDSYRMAGVSQALGMDTHQEGTWVALEKADQDAISPTSLWGLVQWFGQLSPAQLNLALGVEPPTHIIEDEKHMKECGEKVYVPIVYAPREALIWWTDYIDSVSEDALLSSLERFKAISERLAHIVGANVDGWDPAQKALREAFPGITLAECHLHAMIKLGRHLATFKRQRKAMGQPVSEQEETQIRAAFVRVLQAPTPTAYQKALDDLPNVFDNGPLASRKDSLVTKQALFQAWTTDANLAVVSTPLDQCMKFLNRKQDNMQTLHGPKSGLATVNAWAITRNCWRFLKGALRAGLSPLELAGANFLGIPWMQLVNXVLCAWSTLALAAGALTIST* |
| Ga0115360_10084585 | Ga0115360_100845852 | F078289 | MKKTVLILISLFIVFPLYGFNSLVRHEDIPKMRELGVSQEVIQYFISNQTSSVSSEDVIKMKQSGLNNDDIMSAIQSDLYRPERKSTSMKEAELIAKLKEAGMSDEAVLQFIQTVKSTQRVDSNGNVTKQYTNESQRTPYPTTGATFPKPDNYGYDPLNGRFLLLVNPQNQ* |
| Ga0115360_10086493 | Ga0115360_100864931 | F078733 | LIHKFGLELNLASPEAQHPNYKNGLEVKILKKEGIFYAEFSKEHPDIIVVEYDPSITTQDTIYKKIKHLNGNIKRKIFL* |
| Ga0115360_10273664 | Ga0115360_102736641 | F005815 | MKVTHLTMYWTSDEAATVIDFLDRLRDALWETYGEQITEMHREACDNRIQDINQCELGFDDDIPF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |