NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008410

3300008410: Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC5T



Overview

Basic Information
IMG/M Taxon OID3300008410 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111382 | Gp0136555 | Ga0115361
Sample NameSea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC5T
Sequencing StatusPermanent Draft
Sequencing CenterShell Corporation
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size270318699
Sequencing Scaffolds21
Novel Protein Genes22
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria5
Not Available6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Candidatus Sulfomarinibacteraceae → Candidatus Sulfomarinibacter1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga → Methylophaga sp. SB9B1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Coleofasciculus → environmental samples → uncultured Coleofasciculus sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine cold seep biome → cold seep → marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationGulf of Mexico
CoordinatesLat. (o)27.4Long. (o)-93.2Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004052Metagenome / Metatranscriptome455Y
F004928Metagenome / Metatranscriptome418Y
F005815Metagenome / Metatranscriptome389Y
F026445Metagenome / Metatranscriptome198Y
F033261Metagenome / Metatranscriptome178Y
F034978Metagenome173Y
F037736Metagenome / Metatranscriptome167Y
F039402Metagenome / Metatranscriptome164Y
F044014Metagenome155Y
F059476Metagenome / Metatranscriptome134Y
F064731Metagenome128Y
F074891Metagenome / Metatranscriptome119Y
F080062Metagenome / Metatranscriptome115Y
F081143Metagenome / Metatranscriptome114Y
F084253Metagenome112Y
F088919Metagenome109Y
F091298Metagenome / Metatranscriptome107Y
F092080Metagenome107Y
F092081Metagenome107Y
F101182Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0115361_10000067All Organisms → cellular organisms → Bacteria6589Open in IMG/M
Ga0115361_10004402Not Available1710Open in IMG/M
Ga0115361_10006155Not Available1874Open in IMG/M
Ga0115361_10006563Not Available1416Open in IMG/M
Ga0115361_10007860All Organisms → cellular organisms → Bacteria2390Open in IMG/M
Ga0115361_10009437Not Available1175Open in IMG/M
Ga0115361_10009802All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria2431Open in IMG/M
Ga0115361_10015134All Organisms → cellular organisms → Bacteria896Open in IMG/M
Ga0115361_10015956All Organisms → cellular organisms → Bacteria2360Open in IMG/M
Ga0115361_10016444All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1253Open in IMG/M
Ga0115361_10018580All Organisms → cellular organisms → Bacteria793Open in IMG/M
Ga0115361_10021737All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Candidatus Sulfomarinibacteraceae → Candidatus Sulfomarinibacter721Open in IMG/M
Ga0115361_10027461All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria715Open in IMG/M
Ga0115361_10031194All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga → Methylophaga sp. SB9B575Open in IMG/M
Ga0115361_10032255Not Available859Open in IMG/M
Ga0115361_10037861All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria686Open in IMG/M
Ga0115361_10089774All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria695Open in IMG/M
Ga0115361_10094529Not Available895Open in IMG/M
Ga0115361_10094834All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium504Open in IMG/M
Ga0115361_10097418All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont555Open in IMG/M
Ga0115361_10101438All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Coleofasciculus → environmental samples → uncultured Coleofasciculus sp.583Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0115361_10000067Ga0115361_100000676F091298MSSAARLRVTSPVQVLEHLSLGEPIQDTRVAGLLDLDPLVVSRWLCGEDLRGIYQPILLRHCALDGLDLEGRTFYEMVELVGCRVGVAHCTRAYFYSSLLIEDCVFEGDFEGRGIQSDGRMVIHNTVFTGWADFSTINLRGRVDLVDLSFPGGTNLLHVLVNDLHELLGGEIRLSGCQFRAADVPAGLEVARFGIKPLIEGSLGGAEG*
Ga0115361_10004402Ga0115361_100044022F039402MALVDYTDLEHDIAEAPEPKILSRGSEVKARIIAVRSGISDKNNCQWYQPVFDVPSEPMVIEFNTFFWDLADAKGKIDDKQFHRSLNTFKNFATAFGIDYSRPFSWEDDLIGLEGWVILGVKKDDEYGDSNTIKKYVVGR*
Ga0115361_10006155Ga0115361_100061553F044014MDTDYRPRFSFEISWEQKERADRLLAAYGLRRAIFGNILDDVLDIIEDYGGISIGVMMSGEVKPRSIIPTMQRAEETGGKLANVNS*
Ga0115361_10006563Ga0115361_100065631F034978LXXNATKDQIKELKSSILWADIINELNNWKEGFNAEMMSIVDTSADSNPSTASVLLHMGDLNGRQKAVDYMLGILDVFLSIQETNKTDEIDEIEEEEINNGK*
Ga0115361_10007860Ga0115361_100078603F101182MNSYEEGLQYERKMDRISEQIEELMLDAMITALTKIKDRNLFYSDVESRPQNDPYPF*
Ga0115361_10009437Ga0115361_100094372F092081MKPITRNLLITALAILIFTAVVTAGRLRADTGAPPQETAEPPASASQEPLPEFQPTERLPADSAVAFPTDI*
Ga0115361_10009802Ga0115361_100098022F026445MISVNETKQKRQNRTVTLYLGNTLAEYQEMISTEEGMQTLIQQVEIADSLNWGHLADGHHEGCPRCLRFTHHDGYARWTKHFDGTQELVTIIRVRCLDCEAVFTIQPSFVVRYKRYDTDAMEKFMVLLFITEDSYRMAGVSQALGMDTHQEGTWVALEKANRDAISPTSLWGLVQWLGQLSPAQLNLALGVEPPTHIIEDEKHMKECGEKVYVPIVYAPREALIWWIDYIDSVSEDALLNSLERFKAISERLAHIVGANVDGWDPAQKALREAFPGITLAECHLHAMIKLGQHLATFKRQRKAMGQPVSEQEETQIRAAFVRVLQAPTPTAYQKALDDLPNVFDNGPLASRKDSLVTKQALFQAWTTDANLAVVSTPLDQCMKFLNRKQDNMQTLHGPKSGLATVNAWAITRNCWRFLKGALRAGLSPLELAGANFLGIPWMQLVNXVLCAWSTLALAAGALTIST*
Ga0115361_10015134Ga0115361_100151341F092080VMVLICICIPYKGGKRMQDKRVTIRIPFEIWKALRELQTVGKISSIQQAAVTGMNKLIESLTWGEEDNQRDAAKKRVLNVLVKEKPLGNWEDIHKERTGADADRS*
Ga0115361_10015956Ga0115361_100159561F033261VVDTVTLRAVVLHDPQGEKPAERWPVVILTDDREIDARALLNEYGDHWGHETAHRIGKHDLYLDILPPGYVLKTQRDDQRELQREVTFDQTAFFLSGWLRCLVFNLMTRFAEAMGGEYTRMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQDELQPLLDKLNAKRTALPWLNNLVVQFSIAQDEPVHPLTEPEKRNRLFGDG*
Ga0115361_10016444Ga0115361_100164441F005815PGTGKTRVKEFIMTMKVTHLTMYWTSDEAATVIDFLDRLRDALWETYGEQITEMHREACDNRIQDINQCELGFDDDIPF*
Ga0115361_10017151Ga0115361_100171512F088919FNNHRLSVKTQGFMQNARDYTVDIGILDPQPRRSLKICWSNLLIFVALCGAAWSFALTDLAPNSTLLPLILGTCAGLSLILTVYRSHDRLVFYSHYGRVPLVVLFNRSPDQVTLDLFADALEQHIKGAKTHYQCANETLSEELKAHRLLMDEGVISSKRYDIVKQRILSQHSSRCR*
Ga0115361_10018580Ga0115361_100185802F084253IFVLIKAAQGFAVRRTPVRRSRKPAENAEQGKKGHLWMDTRQRG*
Ga0115361_10021737Ga0115361_100217371F064731LYPVPFLDMPRSRLHSDGTWKDNKEVPMKSVFRLTLFACVLALVVPFAGAADFEPDTDGPWINVDVYDLADYGDATFLEYLGRGYVALLDAVKSEGLILDYGVMMKTTGNTNDGDVVVWWSVDSLANYEKAGKRMGELASEIHTGAEWQEIWSVLQDVRTIKSSNLYRAVLWNQPGE*
Ga0115361_10027461Ga0115361_100274611F005815MTMKVTHLATYWTIDEAATAIDFLDRLRDALWETYGEQITTMHREACDNRIQDINQCELGFDDDIPF*
Ga0115361_10031194Ga0115361_100311941F074891MSAVTHDVIVKRKPGKKRRKGLAALRKLRNAMARRKLEQMREEELLQEQIYDVFADTEDSK*
Ga0115361_10032255Ga0115361_100322552F101182MNSYEEDLEYERKVDRISEQIEELMLDAILTALKKIKERNLFYSCVESRPQNDPYPF*
Ga0115361_10037861Ga0115361_100378612F059476MAGQGNRQQSTRMVVTVVLLVLLALGFFAASFFVMTQS*
Ga0115361_10089774Ga0115361_100897741F080062VAIAWGLNTWRQNAAEHGLDAAHEGDRSAAERWVDRALRESKCQLHEARAYLSSSTTRQYVRRPDYVETFVEKLYAGGAPRIELCDSEALGFRFAHYLVVTLPDDPSKHERIIADAQSFVRRD
Ga0115361_10094529Ga0115361_100945291F004052LRTLTTIVFLALTALLFSCDQRNFVSDVDPKLGLECFESHRLTPGTQYEGIEKLTESVLTIRIMNGVDVVMLDCGLNPDGTLRSTGK*
Ga0115361_10094834Ga0115361_100948342F004928MREEITMGQALHSIESEPDHTVEIVVHITETLGQQRRGDLVAALEGNGGITTAEFCPLRYHLMLVRYDRXLYSSQDVLXRVXSQNVXAXLIGPV*
Ga0115361_10097418Ga0115361_100974181F037736VPYRVQLDGLQILWLLANPLWTHGIGESGSKTITGWLLIGAADANHIWWLNTNPLNSLLLHLNSYRIRHLPFGFLTAS*
Ga0115361_10101438Ga0115361_101014381F081143MLEPCEGRLCAVSRTERIANRVGRSSGHKTPRRTTNLDPKGRGDKSMSVKRGITEDVYVVALQRLSDMAKATLPEPQCPVSSVVRPDGWA
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