NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008252

3300008252: Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15B Gulf of Mexico



Overview

Basic Information
IMG/M Taxon OID3300008252 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118071 | Gp0127832 | Ga0105357
Sample NameMethane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15B Gulf of Mexico
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size802871420
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote SCGC AAA799-O181
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote1
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMethane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine cold seep biome → mesocosm → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationGulf of Mexico
CoordinatesLat. (o)27.37Long. (o)-90.57Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002753Metagenome / Metatranscriptome532Y
F005429Metagenome / Metatranscriptome401Y
F007241Metagenome355Y
F010693Metagenome300Y
F012354Metagenome281Y
F013095Metagenome274Y
F015350Metagenome255Y
F016878Metagenome244Y
F031535Metagenome182N
F037935Metagenome167Y
F047906Metagenome / Metatranscriptome149N
F050430Metagenome / Metatranscriptome145N
F063069Metagenome130Y
F066848Metagenome / Metatranscriptome126N
F066857Metagenome / Metatranscriptome126N
F076187Metagenome118Y
F078841Metagenome / Metatranscriptome116N
F090504Metagenome108N
F097524Metagenome / Metatranscriptome104Y
F101886Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0105357_10012943All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4189Open in IMG/M
Ga0105357_10021371All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3157Open in IMG/M
Ga0105357_10022053All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3097Open in IMG/M
Ga0105357_10043113Not Available2121Open in IMG/M
Ga0105357_10046736All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter2025Open in IMG/M
Ga0105357_10062598Not Available1709Open in IMG/M
Ga0105357_10068364All Organisms → cellular organisms → Bacteria1625Open in IMG/M
Ga0105357_10101143All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1287Open in IMG/M
Ga0105357_10104487All Organisms → cellular organisms → Archaea1261Open in IMG/M
Ga0105357_10114172All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote SCGC AAA799-O181196Open in IMG/M
Ga0105357_10130727All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1101Open in IMG/M
Ga0105357_10173649Not Available924Open in IMG/M
Ga0105357_10199611Not Available848Open in IMG/M
Ga0105357_10218256All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae804Open in IMG/M
Ga0105357_10268087Not Available708Open in IMG/M
Ga0105357_10270106All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote705Open in IMG/M
Ga0105357_10333953All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota619Open in IMG/M
Ga0105357_10337348Not Available615Open in IMG/M
Ga0105357_10339714Not Available613Open in IMG/M
Ga0105357_10386048Not Available567Open in IMG/M
Ga0105357_10386417Not Available567Open in IMG/M
Ga0105357_10437776All Organisms → cellular organisms → Eukaryota526Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0105357_10012943Ga0105357_100129433F101886MLKKILIIGFCLFNVAFFIQIGIEVAAVTPEQAMLEGMTQRIYASISTLDYIMAALWGAILYSILTAKKEHFLRASYLYLGFYLCDIHFSHYMSIEMNDPYFTPGALALVVIQAGFLFWAKTRIHAVSSSLSN*
Ga0105357_10021371Ga0105357_100213711F090504MMVVFLVLTIIIFGLILPYWAGVIAKRKGKNFVLWCILQVLFLFPIVLIAFHSPVEK
Ga0105357_10022053Ga0105357_100220534F066848MKAGFPMRFSTRSIHSLRHPQDDVYRTVKRFVGPGFAMGSTDLVLNIVLDGARQIAANQRLAVDPVALPVGPDADAYLAA*
Ga0105357_10043113Ga0105357_100431135F066857MCRLSCRRLDYLHDWQEKAKRVIDIFLITKGNVQFLDVFYIFQCQRNKGFSHFLDIDSKLMVYRDGVVCPSRKDNILLPVVFDEFSVMP*
Ga0105357_10046736Ga0105357_100467361F063069SPWEIFNSSLILELNSPIKKLCPTHEKKVKIKPKIIILKLDLTISIIMFNYEL*
Ga0105357_10062598Ga0105357_100625983F050430MDKKLKENLIVGTKIVGMLFFLIVLITSLVWPGGVDTL
Ga0105357_10068364Ga0105357_100683642F097524MFENDNLYLPVAEQRPFVNVQLKTAETISAAETQLGPQ*
Ga0105357_10101143Ga0105357_101011432F101886MLKKSAIMGFCLFNVVLFILIGIEVAAVTPERAMSEGVTQRIYASISTLDYIMAALWGAILYTILTAKTEHFLRASWLYLGFYLCDIHFSHYMSMEMNDPYFTPGALSLVVIQAWFLYWAKNKINAANAAVPS*
Ga0105357_10104487Ga0105357_101044872F078841MFDDSDVVHSESRSDKAKRAISEYLDEYGQVRATELKKEVCDERGICSEKIFYRCLSELVKSKRIIKNEQNRGNVSYYKPDWGVYENMINIDVIKQGTSTVRILAEVGRHENEVMQLTLLKMAFGNIMSMYASMTLITQQPSKAKTSAVITNTLKNTIPELLEMFSIALEKCGKNRSRILSSLMDYRDGNMGGGWVLENHPDFKK*
Ga0105357_10114172Ga0105357_101141722F013095MTPIIPIKLPMNSTVSLTSPTSGAQKTAIKKPVTIIGIPIPTVICFDAILSITAKIVYEVYDEI*
Ga0105357_10130727Ga0105357_101307271F031535KATTDNIIARGPKNTRAYVAIASANQLRGLTNEVNHFQVPFKTFEFYTVNIE*
Ga0105357_10173649Ga0105357_101736493F076187VAITHFFEFISTEKFFENFKISRNIKSFPKMPLIPDTDIFNASNLDTLFINSERKWLVPR
Ga0105357_10199611Ga0105357_101996111F010693MTGLLIFGLVVLATICLWILIEERKSWKFLVWFIPILLVVVTSTYVTYTSILGFPKFGIPEKGMYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYSKEKHNALEGVKGEAAE
Ga0105357_10218256Ga0105357_102182563F012354NLNNVGLAVFLNPIYEIVPITRPTKSPTRLRIISRKNSNYADSVTVLNKV*
Ga0105357_10268087Ga0105357_102680871F007241KFEVTPPGAAAIIITPIANSGAMGHIFTRINAIIGSKITCERAPTKKSRGCFITLKKSAPVKPKPNTNIIKARAKGKITSVTIFICAIIMIL*
Ga0105357_10270106Ga0105357_102701061F005429MNTMNNHIMKKMIMNMRQETVDEYLKRGGTIEKIPEVLDTVGHWWGYQARYQAESLKDGTQQVVSWKSVQPDERFDTEDDDRKYWNKLNKRCDKLIKKMKIK*
Ga0105357_10333953Ga0105357_103339533F012354PIAKKAIDNLNNVGLAVFLNPIYEIVPITRPTKSPTRLRIISKKNSNYADSVTVLNKV*
Ga0105357_10337348Ga0105357_103373481F016878MKSFKGYLKERFQEWKKAGAPAWTESLSTMLFDLPRSGLKDLKLPLSPSIMKRIWPKSVRSKAFHLTDFDGLKKLKGMQKGKRSISAFYNMDDYMITSGIKTEGGYVVELEGDVLAAAPDDISSQPDKTGRRWLTFSTIMNSSTASDPGLGGASKLKRMEKDLEKLLIDIIVKYDDDPSDSS
Ga0105357_10339703Ga0105357_103397031F000245MKNFKQYNETQKWIRIFGNMDEAGLDDKMDKYVSDEIKKRKLAKHPVNATDDIKMRMKPNKPAFKFPSPNSDMMIHVFLRPMEGKKGMMAFNYQLEDK*
Ga0105357_10339714Ga0105357_103397141F037935IRSTPIAKKTILLLFIFEVGGYLKIFEIQHNKTLLYVYFTHEI*
Ga0105357_10386048Ga0105357_103860482F015350MVMLVGWQYDAFQKNLHEVESRIKKFESVDLFNILEQISLAHIESIDTVDILNKKQMELQVLEEEIKEKFAIQEIELRTQLKTIETKLQKLRSELNDGLTKIERNVSTIDSVVDEKFKTLWMMINNK*
Ga0105357_10386417Ga0105357_103864171F047906VQEERRLFRLRGIAIVALAAKFTQKRTVTKERTPDAIRVPVAHRPVVGLGVLAVRWHHAVTKVRAALRLNMLVVAKRVSRVEIKFAVTAKAGLVQTQRLAVANAVVIRIVVAERVA*
Ga0105357_10437776Ga0105357_104377761F002753SVRFTPATFDIESVKLTDSDRFTPAALDVSSVKLTDSDRFTPATFDIESVKLTDSDRFTPAVFEIESVNNTVSDRFTPAVFEIESVNNTDSDRFTPAAFDIESVKLTDSVRFAANGGITDVAVTRSVNDTDSVRFCIFANESVNDTDSVSSCSRGITDIAVTMSVNDTDSVRFCI
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