Sample 3300008225

3300008225: Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8B Hudson Canyon

Overview

Basic Information
IMG/M Taxon OID	3300008225 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118071 \| Gp0127827 \| Ga0105352
Sample Name	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8B Hudson Canyon
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	290980820
Sequencing Scaffolds	61
Novel Protein Genes	70
Associated Families	54

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Parahaliea → Parahaliea mediterranea	2
All Organisms → cellular organisms → Bacteria	3
Not Available	33
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	4
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine cold seep biome → mesocosm → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Hudson Canyon
Coordinates	Lat. (^o)	39.29	Long. (^o)	-72.2	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F000615	Metagenome / Metatranscriptome	984	Y
F002715	Metagenome / Metatranscriptome	535	Y
F002753	Metagenome / Metatranscriptome	532	Y
F005571	Metagenome / Metatranscriptome	396	Y
F007241	Metagenome	355	Y
F008625	Metagenome / Metatranscriptome	330	Y
F008692	Metagenome / Metatranscriptome	329	Y
F011520	Metagenome	290	Y
F013096	Metagenome / Metatranscriptome	274	Y
F016015	Metagenome / Metatranscriptome	250	Y
F020787	Metagenome / Metatranscriptome	222	N
F023208	Metagenome / Metatranscriptome	211	Y
F023452	Metagenome / Metatranscriptome	210	N
F029236	Metagenome / Metatranscriptome	189	Y
F031535	Metagenome	182	N
F032036	Metagenome / Metatranscriptome	181	N
F032684	Metagenome / Metatranscriptome	179	Y
F034764	Metagenome / Metatranscriptome	174	Y
F035489	Metagenome	172	Y
F036025	Metagenome / Metatranscriptome	171	N
F042933	Metagenome / Metatranscriptome	157	Y
F043455	Metagenome	156	Y
F046009	Metagenome	152	Y
F047906	Metagenome / Metatranscriptome	149	N
F047917	Metagenome	149	Y
F051205	Metagenome / Metatranscriptome	144	Y
F052648	Metagenome / Metatranscriptome	142	Y
F055413	Metagenome	138	Y
F057762	Metagenome / Metatranscriptome	136	Y
F058204	Metagenome / Metatranscriptome	135	Y
F058538	Metagenome / Metatranscriptome	135	N
F061265	Metagenome / Metatranscriptome	132	Y
F061294	Metagenome / Metatranscriptome	132	Y
F062154	Metagenome / Metatranscriptome	131	N
F063069	Metagenome	130	Y
F063198	Metagenome / Metatranscriptome	130	N
F063768	Metagenome / Metatranscriptome	129	N
F064803	Metagenome	128	Y
F066128	Metagenome / Metatranscriptome	127	Y
F066454	Metagenome / Metatranscriptome	126	N
F071320	Metagenome / Metatranscriptome	122	N
F080148	Metagenome	115	N
F080654	Metagenome / Metatranscriptome	115	N
F094427	Metagenome / Metatranscriptome	106	Y
F096688	Metagenome / Metatranscriptome	104	N
F097497	Metagenome / Metatranscriptome	104	Y
F098016	Metagenome / Metatranscriptome	104	N
F098084	Metagenome / Metatranscriptome	104	N
F101349	Metagenome	102	Y
F101886	Metagenome / Metatranscriptome	102	N
F103907	Metagenome / Metatranscriptome	101	N
F105864	Metagenome / Metatranscriptome	100	Y
F105932	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105352_1003634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Parahaliea → Parahaliea mediterranea	6735	Open in IMG/M
Ga0105352_1006039	All Organisms → cellular organisms → Bacteria	4682	Open in IMG/M
Ga0105352_1007781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Parahaliea → Parahaliea mediterranea	3891	Open in IMG/M
Ga0105352_1008271	All Organisms → cellular organisms → Bacteria	3720	Open in IMG/M
Ga0105352_1010276	Not Available	3173	Open in IMG/M
Ga0105352_1013050	Not Available	2657	Open in IMG/M
Ga0105352_1013932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	2534	Open in IMG/M
Ga0105352_1016444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	2246	Open in IMG/M
Ga0105352_1017108	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2186	Open in IMG/M
Ga0105352_1020738	All Organisms → cellular organisms → Bacteria	1902	Open in IMG/M
Ga0105352_1025209	Not Available	1653	Open in IMG/M
Ga0105352_1026025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1619	Open in IMG/M
Ga0105352_1026826	Not Available	1585	Open in IMG/M
Ga0105352_1027116	All Organisms → Viruses → Predicted Viral	1573	Open in IMG/M
Ga0105352_1029820	Not Available	1469	Open in IMG/M
Ga0105352_1031154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1426	Open in IMG/M
Ga0105352_1034471	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1329	Open in IMG/M
Ga0105352_1036087	Not Available	1287	Open in IMG/M
Ga0105352_1036275	Not Available	1282	Open in IMG/M
Ga0105352_1038830	Not Available	1225	Open in IMG/M
Ga0105352_1042485	Not Available	1153	Open in IMG/M
Ga0105352_1045006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	1109	Open in IMG/M
Ga0105352_1045339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1104	Open in IMG/M
Ga0105352_1045549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1100	Open in IMG/M
Ga0105352_1046016	Not Available	1093	Open in IMG/M
Ga0105352_1049535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1040	Open in IMG/M
Ga0105352_1073615	Not Available	801	Open in IMG/M
Ga0105352_1078240	Not Available	772	Open in IMG/M
Ga0105352_1079988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	761	Open in IMG/M
Ga0105352_1082215	Not Available	748	Open in IMG/M
Ga0105352_1094779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	685	Open in IMG/M
Ga0105352_1098493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	668	Open in IMG/M
Ga0105352_1103754	Not Available	648	Open in IMG/M
Ga0105352_1104305	Not Available	646	Open in IMG/M
Ga0105352_1105853	Not Available	640	Open in IMG/M
Ga0105352_1109866	Not Available	625	Open in IMG/M
Ga0105352_1110445	Not Available	623	Open in IMG/M
Ga0105352_1110644	Not Available	623	Open in IMG/M
Ga0105352_1112056	Not Available	618	Open in IMG/M
Ga0105352_1117430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	601	Open in IMG/M
Ga0105352_1118564	Not Available	598	Open in IMG/M
Ga0105352_1118735	Not Available	597	Open in IMG/M
Ga0105352_1122507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	586	Open in IMG/M
Ga0105352_1122826	Not Available	585	Open in IMG/M
Ga0105352_1123648	Not Available	583	Open in IMG/M
Ga0105352_1128475	Not Available	570	Open in IMG/M
Ga0105352_1128516	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	570	Open in IMG/M
Ga0105352_1131168	Not Available	563	Open in IMG/M
Ga0105352_1133201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	558	Open in IMG/M
Ga0105352_1135487	Not Available	553	Open in IMG/M
Ga0105352_1135838	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	552	Open in IMG/M
Ga0105352_1138130	Not Available	547	Open in IMG/M
Ga0105352_1138515	Not Available	546	Open in IMG/M
Ga0105352_1143042	Not Available	536	Open in IMG/M
Ga0105352_1147249	All Organisms → cellular organisms → Eukaryota	526	Open in IMG/M
Ga0105352_1148156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	524	Open in IMG/M
Ga0105352_1148793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	523	Open in IMG/M
Ga0105352_1149761	Not Available	521	Open in IMG/M
Ga0105352_1151322	Not Available	518	Open in IMG/M
Ga0105352_1154654	Not Available	511	Open in IMG/M
Ga0105352_1159021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105352_1003634	Ga0105352_10036344	F055413	FEDQIMLKITDLAENKELDRKTMSGVRGGFDPFAILIDGSTSLNNKVADVDQVFAFGFAQNNAAAVTNNQAINGGNGITYAPVTQNLDQYSDMNVSGIGNVSVS*
Ga0105352_1006039	Ga0105352_10060398	F029236	MDIMDNSNFMNDAMKMIEEWLASSKAWLELESARLKLEAETRLWAAENEVFSPEAGCYDWEFIDEWL*
Ga0105352_1007781	Ga0105352_10077814	F055413	MLKVTDLTVNKELDSKTMTSVRGGFDPFAILIDGSTSLNNKVADVDQIFQLGLSQTNAGQVTNNQAINGGNGIVYAPVDQNLSQSNLMNVYDIGNVSVS*
Ga0105352_1008271	Ga0105352_10082713	F062154	MQSRRNAVDANGVKVLSVVNARPEPPVNSVANGVREPSVVNVRPEPPVNSVVNARPERLVNRVVNGVRAPSVVNVRPEQAVSVDRSPVAVVVREDQVVLCGCSL*
Ga0105352_1010276	Ga0105352_10102763	F055413	MLKITDLAENKELDRKTMSGVRGGFDPFAILIDGSTSLTNKVADVDQAFAFGLAQNNAGAVTNNQAINGGNGITYAPVNQTLTQDSAMSVYDIGNVYVS*
Ga0105352_1013050	Ga0105352_10130501	F058538	MGNRVYSQYETTVMNRRRLHHLLSWVNRELHLDYEVIQENRDVFYVIFHDLDIKKTVAIQKHLKSNPHTEN
Ga0105352_1013932	Ga0105352_10139321	F061294	MQAIESFESRCVEYQTQSRITQDTIALTVYLQSHQVIYSQIDYMLPEHPPSVEMLAIMVKDVCQGDSFYTYVFEEITHRYIELVGDIGVSPQVIFYYVSNVIISLLVLRRNNSQLSTEILIKIIQRFNFRDTTLRAGIEVIAEEVLRRCFVSINESN
Ga0105352_1016444	Ga0105352_10164441	F098084	MNSNAIRVLLALVFLVSSVNSDAARPSQCDKPMHSDHIIYDCYEDWAVRHVFDRGALTHKYSDATTLMGVGWFGSSQFQINRRQDGSIFYIIPSQIDRVEMTVGEQVFVSEQAPSAVFYGEVTDAMLIAISQTTEPVQMLIFSEGKAIEASFSELGSNAALRWIGAID*
Ga0105352_1017108	Ga0105352_10171081	F047906	RGIAIVALAAKFTQKRTVTKERTPDAIRVPVAHRPVVGLEVLAVRWHHAVTKVRAALRLNMLVVAKRVSRVEIKFAVTAKAGLVQTQRLGVANAVANAVVIRIVVAERVA*
Ga0105352_1020738	Ga0105352_10207382	F061265	MSVDWDLIWTILQVVALLIIAREIDKRIRRKRKK*
Ga0105352_1025209	Ga0105352_10252091	F080654	IQDSKKVNAEILETVVAEVISEESEPVGKTNLEERQDLWNKIQKFNPEASAMDYYDNDEWDLEKMRSDLKVLLEKERFGR*
Ga0105352_1026025	Ga0105352_10260251	F058538	MYSQYETTVINRRRLHDLLTWVNRKYHLEYKVVQENRDVFYVIFHDLNIKQTVAIQKQIKGSSQPEHFDMR*
Ga0105352_1026826	Ga0105352_10268265	F103907	MYPMTKLATAVNSVTTFEMTPSVETYLQEQIDFLSQHACNQLGTIANYANIAAFQTVPTFDQMFGDDNGLALDSNQRELKYAAFTVANSPEMLVQQKASGNVYGAQDDSGVQQTVFSDTDRNKIQLSEFGYKVVTETAERFAKTMADVSMLNAHFGLVPTTSRTERYELFVATERHKKNQKREMQMRTEAKFTESKAHNDCIVQLVKVAQATSHLV*
Ga0105352_1027116	Ga0105352_10271162	F066454	MSIRLDVLILINSGVTDRSEIMEKLGVNIRSVSNCVRFLVKEGWVEYSRESISAVGSVGYRITQVGIDKIKASTVDEYRQSPQRKIPDYEVMRSHLGVGGDVTRSELINLWNELTDYYLPYEGDKEFTEIAVFPP*
Ga0105352_1029820	Ga0105352_10298201	F055413	MHTERNIENDKSEEIIMLNIKDLCVSKELDTKTMAGVRGGFDPFAILLNGSTSLNSKVADVNQVFQFAFEQNNAGAVTNNQAITGGNGITYAPVDQSLSQGNTLSVYDVGNTWVS*
Ga0105352_1031154	Ga0105352_10311542	F063768	MDMDAVPDPLTTAEGVAEFVVLAELSMALSERLGGWSTDGADPDSSATMASLAARLGGHSAWWTERIPESVLLEGERAAASGSGRLAEVLGLLDVAASDRRAAVVPVLDRLVAYLGALAERLSPLGDAPARRTIRLVLADLEDRPR*
Ga0105352_1034471	Ga0105352_10344712	F013096	MLTDTVGDSAVGLSTLSHTNTVAVYEPDASGVHDNAGLIDCPAVKEPVIHA
Ga0105352_1036087	Ga0105352_10360872	F098016	LPDEASADERLAQVSDDLPEPRLVLPLDDEEPDAPVLEDNAPVSLNGLSQHPADLGQHAAPSIELLLTRPDPAAAGSTVAQPILPGSQPVSPVPGWMSVADLHEPEDQLFLPEMPIGLPAELAEPVAAVFTNGASDAPLAEVPLPEPTSVAEIELVDADLDSWMASLESPSMFLDVPPVQVAMNDT
Ga0105352_1036275	Ga0105352_10362753	F063198	VEITKLYIVRMRLEENSLISEDRLILNAPSKIRINRVKVVHTGATEARSSGDVYPNPLGPIRNPSIIRNNTSGILVRRNNASDKK
Ga0105352_1038830	Ga0105352_10388302	F071320	VISWEATVSQGWEKIARDDKLYSMASRVSVFDADIPLRESVFFLSNPSSCFRKNPDRLYCSSDCRS*
Ga0105352_1042485	Ga0105352_10424851	F011520	LLIIVKKLNVVVDLNRFINHISFKIASIVYLITLNEKN*
Ga0105352_1045006	Ga0105352_10450062	F094427	VELNLLQANISKPISSVEHLQVELLMLYGETCDIGEGKHYTSLTRRGLKRLMKDMRHIQQHVNSLGSTYVIDADGDTVLTVGHKYDHLTVTRGVTHASY*
Ga0105352_1045006	Ga0105352_10450063	F061294	MQAIDAFESRCVDYQEQHSITPESTALAVYLLSHNVVYTHVDYMMPEHPPTVEILSIVAKEVCRGESPYRLVFEEISMRYVELVGDEGISPQVVFYYVSNVIISLLVLSRHKSQLSSEILIKIIQRFNFRDAVLRAGVEVIAEEVLRRCFLDINDKSICGSRVA*
Ga0105352_1045339	Ga0105352_10453393	F058204	FSLKKKIENIVVKIGAAKEILTTVAKGKFLNAINIATKAINPNKHLKKCKPTLFV*
Ga0105352_1045549	Ga0105352_10455492	F096688	MGIIKSLAVVGYATVMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWVNWRRQNARTRGIEVAGNSGGNRRGLCG*
Ga0105352_1046016	Ga0105352_10460162	F029236	MEMKDNSDFMNDAMKMIEEWLASSKAWFELESARLKLAVETSAWEAENDVFSPEAGCYEWEFIDEWL*
Ga0105352_1049535	Ga0105352_10495352	F058538	MYSQYETTVINRRRLHELLAWVNRKYHLDYEVVQENRDIFYVIFHDLNIKQTAAIQKQIKGSAQPEHFEIHEYVQLTDTSTTPPSQL*
Ga0105352_1061753	Ga0105352_10617531	F105932	MSRRITNVWRANKNKSGIDLTQQKAAVQLGVTQPMFSQMLNGTVAINPMMVLSVASLLRCDLGALVEGLNEYKILHAVSPTTSVGIPVSFTLSGKPVSGKVTKIMTHTISEAFAIEIDTDEYAPRYSNGEYAIIDPLTKWEMGNQVLVRYGKGSCLVRVVSS
Ga0105352_1073615	Ga0105352_10736152	F032684	MILLCTLRVLALIDKFKSNFSLFKAEEVMFLPFGIITKNTLKNIIQPKITPTDKKANLDPKIFVKQNEITAPIMSNTTEKIILLFINLDLQI
Ga0105352_1078240	Ga0105352_10782401	F052648	TGGCKPDGSSLTGSFQKTKIPNTIKIRDNTQETTGLLMLKSVIYIISLLV*
Ga0105352_1079988	Ga0105352_10799881	F023452	PLIKNNLVLFIFIAARPVDFNIGSITIKANRFRKKTTSRICKFSDAFLTKITIIEKKTIAKIFKIIALV*
Ga0105352_1082215	Ga0105352_10822152	F055413	MLKVTDLTVNKALDSKTMASVRGGFDPFAILINGSTSLNNKVADVDQIFQLALSQTNAGEVTNNQAINGGNGIVYAPVDQNLSQSNWMDVSGLGNVSVS*
Ga0105352_1094779	Ga0105352_10947791	F063768	MGDGRESNPVTTAEGAGEFIVLAEFSTALSGLLAGWSTDGADPDTSATMASLAARLGEHAGWWMDRTPESVLLEGEQAAASGAGRLTDILALLDVPPSDRRSAVAPVLDRLVAYLGVLSERLSPIGDAPALRTIRLV
Ga0105352_1098493	Ga0105352_10984932	F101886	ILIGIEVAAVTPERAMLEGVTQRIYASISTLDYIMAALWGAILYTILTAKTEHFLRASWLYLGFYLCDIHFSHYMSMEMNDPYFTPGALSLVVIQAWFLYWAKTRIDAANVAVSN*
Ga0105352_1103754	Ga0105352_11037542	F000615	MCRLRTFYECSDGEMGWAEIVLSYDEDIAAHIRHWSTGGRMVISEHIDLV*
Ga0105352_1104305	Ga0105352_11043052	F051205	FLAIWIVGCETSIVGCFGHWVTGPGPQRGTRALNRDSHLPYYQCVDENNKGSNLEKRVQYD*
Ga0105352_1105045	Ga0105352_11050451	F105864	TPVISMINNTKIIPDPGIVVSKLNIASGRYFCGTRLLISSKKNLITMTVKARGIQKRRPEIK*
Ga0105352_1105853	Ga0105352_11058533	F080148	ACGERVVEIDARIGVPVYANSTSTGTTPATRGNPPCIRVKTIPTANATSGYVPYGREIYDNVNLLLGQDVDLLGGIIKDIESLRDLVQLVKNARNKYEIYNGRAKEY*
Ga0105352_1109866	Ga0105352_11098662	F097497	MPKKPRKRSAPKQRDPSWQLRHALGHKVEIDPKAYTRKLKHPEEIDDPEPSD*
Ga0105352_1110445	Ga0105352_11104451	F101349	MNKTNGIDNNKVVDLDAFRKEKFTLKICIGGYYVHPEMGVHLHCVGITD
Ga0105352_1110644	Ga0105352_11106442	F008692	MAKRNGNKQKRLNKKELYMPTSEEEFQADLDAQDMRYLHYCREQEEMYNDPVMNWSGLR*
Ga0105352_1110748	Ga0105352_11107481	F020787	MPKVRFEIYSTERGKKLIDLGELLVESGYLQSFDLDEEGTEVVFNFEVNAGFSVEKGEINMKELRSYFDAADDVGKKFTDELLRSVFDLDNT
Ga0105352_1112056	Ga0105352_11120561	F064803	PCARTVQGEAPVSETINNPSPNPNNVRPKHKKRKVEIFGFKFRGLSELHETLGIFFKDKNIFKCYLLLYN*
Ga0105352_1117430	Ga0105352_11174302	F063069	EIFNSSLIFELNNPIKKLCPTHEKKVKVTPKIIILKFDLTISIIIL*
Ga0105352_1118564	Ga0105352_11185641	F000245	MKTFSRFKESKLDDKLDKLVSDEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFPSPNSDMMIHVFLRKMTPPKKGMMAFNY
Ga0105352_1118564	Ga0105352_11185642	F002715	VGLLKNEVEVRGKQIETLLQKLDLTTDKLQQLTVQIIQLNTRQEDYLRHSSTMTDEFKILHTRIGDLHDKQLASQKEIEIRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISIFLKD*
Ga0105352_1118735	Ga0105352_11187351	F016015	MINVKKFENRIVKFKRIDSEGNESDQEAEVRRLDYDQNEDIPRSVTARLVNPLNFIVTFGYDKSKNKFTGPLGTDIWESNFDIDNFIKSSKMGVADRYMKSPKRNRISF*
Ga0105352_1122507	Ga0105352_11225072	F058538	MYSQYETTVINRKRLHDLLTWVNQKYYLEYEVVQENRDVFYVIFHDLNIKQTVAIQKQIKGSSQPEHFDMH*
Ga0105352_1122826	Ga0105352_11228261	F047917	MADTLTNTEKKSAFNPAKQPLRVGDFRITTMKLTSANLDIKTGSGANMLDLTTSVWHELNFYEDIYSPIVSGDITLTDTVGLIESFPIIGEEILDVS
Ga0105352_1123648	Ga0105352_11236481	F055413	MLNITDLTASKELDTKTMTSVRGGFDPFAIIDGSTSLNNKVADVDQIFMFDLAQNNAGQVTNNQAIQGGNGITYAPVTQHLDQYSDMTVRGIGRVSVS*
Ga0105352_1128475	Ga0105352_11284751	F052648	ITGGRPDGSSLTGNFQKINKPNTINIKEKTVDTTGLLILRSVINIIY
Ga0105352_1128516	Ga0105352_11285161	F043455	MNMSMRKETVEEYLRRGKTITKIPQVLDTIGSIWNQQGYEVNKDRHGHKKFGIRLEDWKSMQPDIRFDTEDDDRKYWNQLNKRCDKLLKKIEKKQKKT*
Ga0105352_1131168	Ga0105352_11311681	F042933	MVVERDVNGVEFTYENKDVLAFEPDPNQREPDEVDEPAE*
Ga0105352_1133201	Ga0105352_11332012	F034764	MIMFQNTSNKAPYVFVPVEYPELAEGEEIKPYQPGFICSEWLEIEIVEPSEHN*
Ga0105352_1135487	Ga0105352_11354871	F023208	MGTTKNFWFYFNATPVVFSILFFSINLLILWSSDYEARAFNDAVIACKDVSNDKWADYERTYQDKCIDEFFGGKEDGIISIFEILWVWGLIFSIIGIPFIIP
Ga0105352_1135838	Ga0105352_11358381	F046009	MTTTLKVIPEEKPDINKVQTCSLLDKSAMSRNVFTKEECKRIIEIGRSWEQVDAQIQTKSPEEEAEKNDDYRNCKMYGPPVDETAGWLWIGQKISP
Ga0105352_1135838	Ga0105352_11358382	F035489	EHMSTGLCALQLALETGYDGIDVIGFSGLKDRNYQNINDGTKNYTFDPAVPDKVRVPETYVPLDASHWESVYMKLVKQYPKIKVNLI*
Ga0105352_1138130	Ga0105352_11381301	F057762	INIEVILASQAHQVPQVGFPQIDPVIKAIILNTKPDGAKLLAIIEKFLFLNIKLIIESKAINEKIPRAIHADGT*
Ga0105352_1138515	Ga0105352_11385152	F031535	YVPIASANQLRGLTNEVNHFQVPFKTFGFYAIDIE*
Ga0105352_1139620	Ga0105352_11396202	F000245	MKTFKEYRLDKKLDKYVSDEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPSSDMMIHVFLRPMKGKKGMMAFNYQLEDK*
Ga0105352_1143042	Ga0105352_11430421	F032036	MKWIILVYLTIAAGTTEGDISYTRLEHPAKDFQECIDIEQQINDLLHRGRESETKYVRSLYWEYKNTLGDIKAECVFANSPLPYSKRFSKKK*
Ga0105352_1143042	Ga0105352_11430422	F008625	RLVWRHIQKENQKMILDPLGYDPIIDIDEIHSRNRRKTDDPYIKATMKNADHKRWKDNPAERR*
Ga0105352_1147249	Ga0105352_11472491	F002753	DSDRFTPADFAIESVKLTDSDRFTPADFAIESVKLTDSVRFTPATFDIESVKLIDSDRFTPAVFEIESVNNTVSDRFTPADFAIESVKLTDSDRFTPAVFDIESVNDTDSVRFTPAALDVSSVNDIDSVRFTPAVFEIESVNNTDSDRFTPAVFEIESVNDTDSDRFTPAAFATE
Ga0105352_1148156	Ga0105352_11481561	F034764	MIMIQNTSNKPPYVFVPVEYPELAEGEEIKPYQPGLICVEWLTPELVEPSQHN*
Ga0105352_1148324	Ga0105352_11483242	F036025	LFIIELEKMSLRCLDTGSVHEEVAAKIILTKEMTMNIDKLAPIAAVIVAVIAVVVVGGVEFSFSPQGGGYVLDGNAQWFILILTAIGLIHGLMSPVTDHASQALAIVAAFAFPRLADTLDSIPAVGMYLNQFVDQLAIAIAGYAI
Ga0105352_1148793	Ga0105352_11487931	F034764	MFQNTSNNTPYVFVPIEYPELADGEEIRPYQPGLICSEWLELELVEPYEHN*
Ga0105352_1149761	Ga0105352_11497612	F007241	VKTHIKLIIAVSDIERATSPLAKEVNKFEVTPPGAAAIIITPIANSGAMGHIFTRIKAIIGSRITCDKEPTKKSRGCFTTLKKSAPVKPKPSTNIIKAKAKGKITSVTIFIFVIIMIL*
Ga0105352_1151322	Ga0105352_11513222	F005571	MIIKSLKERIVNLTKVTTDNVQTTVEAELRQLEMKGGKPIQVSVVLAKEDNFQFTMDWDSTMSKFSTTLDGIEWYSDFDYSLYSPKLWETGSIARAPRRGRNSPI*
Ga0105352_1154654	Ga0105352_11546541	F066128	AEKKAEARIRMKSKTLSQKVDSDSNQLPIIINEFLF*
Ga0105352_1159021	Ga0105352_11590211	F101886	VVLFILIGIEVAAVTPERAMLEGVTQRIYASISTLDYIMAALWGAILYTTLTAKSEHFLRASWLYLGFYLCDIHFSHYMSMEMNDPYFTPGALFLVVIQAWFLYWAKTRIDAANVAVSN*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008225: Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8B Hudson Canyon

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences