Sample 3300007910

Overview

Basic Information
IMG/M Taxon OID	3300007910 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118143 \| Gp0131539 \| Ga0111549
Sample Name	Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_3
Sequencing Status	Permanent Draft
Sequencing Center	University of Liverpool
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	146326664
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	5
All Organisms → Viruses → Predicted Viral	1
Not Available	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	estuarine biome → estuary → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	United Kingdom
Coordinates	Lat. (^o)	54.9632021	Long. (^o)	-1.6348029	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F014730	Metagenome / Metatranscriptome	260	Y
F018557	Metagenome / Metatranscriptome	234	Y
F036594	Metagenome / Metatranscriptome	169	N
F043481	Metagenome / Metatranscriptome	156	Y
F068993	Metagenome	124	Y
F074523	Metagenome / Metatranscriptome	119	Y
F092297	Metagenome	107	Y
F094580	Metagenome	106	Y
F098192	Metagenome	104	Y
F103182	Metagenome	101	Y
F104571	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F014730

Metagenome / Metatranscriptome

260

F018557

Metagenome / Metatranscriptome

234

F036594

Metagenome / Metatranscriptome

169

F043481

Metagenome / Metatranscriptome

156

F068993

Metagenome

124

F074523

Metagenome / Metatranscriptome

119

F092297

Metagenome

107

F094580

Metagenome

106

F098192

Metagenome

104

F103182

Metagenome

101

F104571

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0111549_1000731	All Organisms → cellular organisms → Archaea	8725	Open in IMG/M
Ga0111549_1001151	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	6824	Open in IMG/M
Ga0111549_1001461	All Organisms → cellular organisms → Archaea	6010	Open in IMG/M
Ga0111549_1008577	All Organisms → Viruses → Predicted Viral	2287	Open in IMG/M
Ga0111549_1010006	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2098	Open in IMG/M
Ga0111549_1016403	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1569	Open in IMG/M
Ga0111549_1039538	Not Available	898	Open in IMG/M
Ga0111549_1041135	Not Available	874	Open in IMG/M
Ga0111549_1049039	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	775	Open in IMG/M
Ga0111549_1050028	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
Ga0111549_1064107	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	639	Open in IMG/M
Ga0111549_1072006	All Organisms → cellular organisms → Archaea	586	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0111549_1000731

All Organisms → cellular organisms → Archaea

8725

Open in IMG/M

Ga0111549_1001151

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

6824

Open in IMG/M

Ga0111549_1001461

All Organisms → cellular organisms → Archaea

6010

Open in IMG/M

Ga0111549_1008577

All Organisms → Viruses → Predicted Viral

2287

Open in IMG/M

Ga0111549_1010006

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

2098

Open in IMG/M

Ga0111549_1016403

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1569

Open in IMG/M

Ga0111549_1039538

Not Available

898

Open in IMG/M

Ga0111549_1041135

Not Available

874

Open in IMG/M

Ga0111549_1049039

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

775

Open in IMG/M

Ga0111549_1050028

All Organisms → cellular organisms → Bacteria

765

Open in IMG/M

Ga0111549_1064107

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

639

Open in IMG/M

Ga0111549_1072006

All Organisms → cellular organisms → Archaea

586

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0111549_1000731	Ga0111549_10007312	F092297	MVSIKSPVRLKDLEGKAGVAFKTLLGIEGSKKELYDNDKMLVISLEKGECIAFMDSESCIWELYRNTKGRYYLRELSKVS*
Ga0111549_1001151	Ga0111549_10011512	F043481	LAKEIKLERGVRGYNIIKKKCPNCEAEFLFKIHKDVVHDVVGEGLYYPEENVVRCNICMSTFKYSYE*
Ga0111549_1001461	Ga0111549_10014615	F103182	VNGDNEVTKDHTKMTKIEVYKDYGVFSSQSKSKTKTRRPPKKLQQCVKCGRVGDAMTKHSLTGEHKPPFIWLCRQPCHDEVHKFGLKMTKEEKAALKRQPQCTIQFSPEVNIANPYTKLVEPESLEGGKFKQSFKRIDSKNEEQN*
Ga0111549_1008577	Ga0111549_10085771	F104571	MIDTLKVFTDDFKISDNAGLFVQPATVNYETGETNEHNLFRKDNGKWVTGAKAYVNTGDYQLTIKPIISNGNRNGKVLLFLQTSLPKIIHGENFQALNNDETVQAIDAIAGDLQDRGVGVNLQDCKTSRIDVFRTAIADNPFSSYAPVFRLLSAKRSHTTDYGTTFTWANTQREICVYDKGTEMRNRGVKSSALPTNAIRFEYRLKTSRVCKNETGAGNVRQLVNNLDNLQDVYRQALENSIFSLDAKALATVTANELENGLRVYAKRYGGAFVNRFYRDFGAYALGRLTGVETVKSVLSSVLDDRYKLWRH
Ga0111549_1010006	Ga0111549_10100061	F014730	MLFKREIGINCSLDVKMLDTLNDGIVLSIEQNLVDNNNLLFLTDFVSQHKLSLLLDSERYFISTNVLSPSCQYGWDS*
Ga0111549_1016403	Ga0111549_10164032	F018557	MAEPKDGRPIFFPENLVTFGNLALFLWIVLDTVAFLLYDTNAGIAFFIVALIAIYGVLHFIGCLRPCYNCIKCTHGMGRLAALYFGKRILKDYKYSYKLPTAIIFTIFIGAFPASFALYSAIIDFTAIKVVVFAVLLAFTIFSGLTWRPKKRTLKAQTPTTS*
Ga0111549_1039538	Ga0111549_10395382	F094580	MDDAYGRTTTRVYGMEDEVLLADYQTNAAAFLTALQAITDLGVTKATIMVPVTSPEFAETAGANVDVGGTASGWITDGQKKASMKMPGIKASLVAADGSIAVATVVATFLALFEDAAKFNLSDGEQIDSWIRAALDR*
Ga0111549_1041135	Ga0111549_10411352	F098192	MKCPLRIDSQGNASDCYKDECAWWVIDAEIEGSKSKGACAVLEVAVNGIFVTIGDDEEEDYE*
Ga0111549_1049039	Ga0111549_10490391	F018557	MAEPKDGRPIFFPENLVTFGNLALFMWIVLDSVAFLLYDTNAGIAFFIVALIAIYGVLHFIGCLRPCYNCIKCTHGMGRLAALYFGKRILKDYKYSYKLPTAIIFTIFIGAFPAAFALYSTAIDFTVIKAAVFAVLLTITIYSGLTWRTKKRKPTQIKENVQAQSVQS*
Ga0111549_1050028	Ga0111549_10500281	F036594	LNEAYLSRVDTFKNIEPEEPFSSYYSLFSLLKARRAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERKLETAGLPPTMRFEHRLLNKQKVQNIYGFGRVGEIFHGGYEVIREKQVESWKGSLFNFTAEELVLLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASHAGKEVIVEALQNFEADRMKIWRAVQVFEEAERELMVLKQEEGSKKTLGSLYEELRRKVCLN*
Ga0111549_1064107	Ga0111549_10641071	F074523	EAQKQVIGSFQSQVDRNSGVWDLYNPQKIAENHSVAVNNFTSYLLNTANLVNNALLSNIRIYNTALEQTRDNLKACAKTNTNCIKSGEQSGNSQNRVDE*
Ga0111549_1072006	Ga0111549_10720061	F068993	KGYKSITVKAEVYDYFYRDWLKVKSEYTITKGIRSFSAYITYRLAQLIKDDKKPA*

Scaffold ID

Protein ID

Family

Sequence

Ga0111549_1000731

Ga0111549_10007312

F092297

MVSIKSPVRLKDLEGKAGVAFKTLLGIEGSKKELYDNDKMLVISLEKGECIAFMDSESCIWELYRNTKGRYYLRELSKVS*

Ga0111549_1001151

Ga0111549_10011512

F043481

LAKEIKLERGVRGYNIIKKKCPNCEAEFLFKIHKDVVHDVVGEGLYYPEENVVRCNICMSTFKYSYE*

Ga0111549_1001461

Ga0111549_10014615

F103182

VNGDNEVTKDHTKMTKIEVYKDYGVFSSQSKSKTKTRRPPKKLQQCVKCGRVGDAMTKHSLTGEHKPPFIWLCRQPCHDEVHKFGLKMTKEEKAALKRQPQCTIQFSPEVNIANPYTKLVEPESLEGGKFKQSFKRIDSKNEEQN*

Ga0111549_1008577

Ga0111549_10085771

F104571

MIDTLKVFTDDFKISDNAGLFVQPATVNYETGETNEHNLFRKDNGKWVTGAKAYVNTGDYQLTIKPIISNGNRNGKVLLFLQTSLPKIIHGENFQALNNDETVQAIDAIAGDLQDRGVGVNLQDCKTSRIDVFRTAIADNPFSSYAPVFRLLSAKRSHTTDYGTTFTWANTQREICVYDKGTEMRNRGVKSSALPTNAIRFEYRLKTSRVCKNETGAGNVRQLVNNLDNLQDVYRQALENSIFSLDAKALATVTANELENGLRVYAKRYGGAFVNRFYRDFGAYALGRLTGVETVKSVLSSVLDDRYKLWRH

Ga0111549_1010006

Ga0111549_10100061

F014730

MLFKREIGINCSLDVKMLDTLNDGIVLSIEQNLVDNNNLLFLTDFVSQHKLSLLLDSERYFISTNVLSPSCQYGWDS*

Ga0111549_1016403

Ga0111549_10164032

F018557

MAEPKDGRPIFFPENLVTFGNLALFLWIVLDTVAFLLYDTNAGIAFFIVALIAIYGVLHFIGCLRPCYNCIKCTHGMGRLAALYFGKRILKDYKYSYKLPTAIIFTIFIGAFPASFALYSAIIDFTAIKVVVFAVLLAFTIFSGLTWRPKKRTLKAQTPTTS*

Ga0111549_1039538

Ga0111549_10395382

F094580

MDDAYGRTTTRVYGMEDEVLLADYQTNAAAFLTALQAITDLGVTKATIMVPVTSPEFAETAGANVDVGGTASGWITDGQKKASMKMPGIKASLVAADGSIAVATVVATFLALFEDAAKFNLSDGEQIDSWIRAALDR*

Ga0111549_1041135

Ga0111549_10411352

F098192

MKCPLRIDSQGNASDCYKDECAWWVIDAEIEGSKSKGACAVLEVAVNGIFVTIGDDEEEDYE*

Ga0111549_1049039

Ga0111549_10490391

F018557

MAEPKDGRPIFFPENLVTFGNLALFMWIVLDSVAFLLYDTNAGIAFFIVALIAIYGVLHFIGCLRPCYNCIKCTHGMGRLAALYFGKRILKDYKYSYKLPTAIIFTIFIGAFPAAFALYSTAIDFTVIKAAVFAVLLTITIYSGLTWRTKKRKPTQIKENVQAQSVQS*

Ga0111549_1050028

Ga0111549_10500281

F036594

LNEAYLSRVDTFKNIEPEEPFSSYYSLFSLLKARRAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERKLETAGLPPTMRFEHRLLNKQKVQNIYGFGRVGEIFHGGYEVIREKQVESWKGSLFNFTAEELVLLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASHAGKEVIVEALQNFEADRMKIWRAVQVFEEAERELMVLKQEEGSKKTLGSLYEELRRKVCLN*

Ga0111549_1064107

Ga0111549_10641071

F074523

EAQKQVIGSFQSQVDRNSGVWDLYNPQKIAENHSVAVNNFTSYLLNTANLVNNALLSNIRIYNTALEQTRDNLKACAKTNTNCIKSGEQSGNSQNRVDE*

Ga0111549_1072006

Ga0111549_10720061

F068993

KGYKSITVKAEVYDYFYRDWLKVKSEYTITKGIRSFSAYITYRLAQLIKDDKKPA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007910: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_3

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences