Sample 3300007730

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300007730

3300007730: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_RNA CLC_assembly

Overview

Basic Information
IMG/M Taxon OID	3300007730 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111355 \| Gp0128094 \| Ga0105669
Sample Name	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_RNA CLC_assembly
Sequencing Status	Permanent Draft
Sequencing Center	Marine Biological Laboratory
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	9055717
Sequencing Scaffolds	3
Novel Protein Genes	3
Associated Families	3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Axial Seamount, northeast Pacific Ocean
Coordinates	Lat. (^o)	45.9372	Long. (^o)	-130.082	Alt. (m)	N/A	Depth (m)	1500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008173	Metatranscriptome	337	Y
F021318	Metagenome / Metatranscriptome	219	Y
F098669	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105669_106255	Not Available	515	Open in IMG/M
Ga0105669_109568	Not Available	984	Open in IMG/M
Ga0105669_112545	Not Available	581	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105669_106255	Ga0105669_1062551	F098669	METATRSRKQKWRLKEAEGLGRKRRVEEAERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKI
Ga0105669_109568	Ga0105669_1095681	F021318	MQAKINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFGEVNGTPIYNYNTHFDAVKTAKSDKLGTSYFHDAFVDPEFKSLAEDYVSAVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEVAVPNLLISIDTVTKFTGLEKLDEGMRARVKELPYTRSTFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAAWDTFVSSTTQSTGDPTIDIGIASLNIEGSGVGGRLNR
Ga0105669_112545	Ga0105669_1125451	F008173	NEVENVVAEISERYGRFQDIECRQLKDTLVGIEDSGPGGAGRVRVSDFYKLAVDHGKWQFSESLDYLRNMGALDESDASKPSVIIPNYISGPSNCVASSGFYSVCCLDECEGILSRLEQFIAAPEASATQIAAFISNIPSATMPSNRKLSPWLHQRLDELDEHHKGRIPLHGRLFGQWMHYAYPRECAFPHIS

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