| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300007591 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114292 | Gp0125889 | Ga0102781 |
| Sample Name | Marine microbial communities from the Southern Atlantic ocean - KN S15 DCM_B metaT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 54411900 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 26 |
| Associated Families | 25 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 12 |
| Not Available | 9 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Southern Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | -28.2362 | Long. (o) | -38.4949 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003068 | Metagenome / Metatranscriptome | 509 | Y |
| F005533 | Metagenome / Metatranscriptome | 397 | Y |
| F005911 | Metagenome / Metatranscriptome | 386 | Y |
| F011082 | Metatranscriptome | 295 | Y |
| F013133 | Metagenome / Metatranscriptome | 274 | Y |
| F017306 | Metagenome / Metatranscriptome | 241 | Y |
| F017397 | Metagenome / Metatranscriptome | 241 | N |
| F018182 | Metagenome / Metatranscriptome | 236 | N |
| F021310 | Metatranscriptome | 219 | N |
| F022419 | Metagenome / Metatranscriptome | 214 | N |
| F023863 | Metagenome / Metatranscriptome | 208 | N |
| F025972 | Metagenome / Metatranscriptome | 199 | N |
| F028529 | Metagenome / Metatranscriptome | 191 | N |
| F037241 | Metagenome / Metatranscriptome | 168 | N |
| F041437 | Metagenome / Metatranscriptome | 160 | Y |
| F041790 | Metagenome / Metatranscriptome | 159 | N |
| F051931 | Metagenome / Metatranscriptome | 143 | N |
| F056636 | Metagenome / Metatranscriptome | 137 | N |
| F060971 | Metagenome / Metatranscriptome | 132 | Y |
| F067833 | Metagenome / Metatranscriptome | 125 | Y |
| F077350 | Metagenome / Metatranscriptome | 117 | Y |
| F082819 | Metagenome / Metatranscriptome | 113 | Y |
| F088935 | Metagenome / Metatranscriptome | 109 | N |
| F103401 | Metagenome / Metatranscriptome | 101 | Y |
| F103879 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0102781_1001112 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 864 | Open in IMG/M |
| Ga0102781_1001471 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 624 | Open in IMG/M |
| Ga0102781_1002050 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 1228 | Open in IMG/M |
| Ga0102781_1002591 | Not Available | 1684 | Open in IMG/M |
| Ga0102781_1005641 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 519 | Open in IMG/M |
| Ga0102781_1006269 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 872 | Open in IMG/M |
| Ga0102781_1006404 | All Organisms → Viruses → Predicted Viral | 1121 | Open in IMG/M |
| Ga0102781_1012978 | Not Available | 518 | Open in IMG/M |
| Ga0102781_1146035 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 518 | Open in IMG/M |
| Ga0102781_1148921 | Not Available | 567 | Open in IMG/M |
| Ga0102781_1149548 | Not Available | 750 | Open in IMG/M |
| Ga0102781_1149828 | Not Available | 516 | Open in IMG/M |
| Ga0102781_1156291 | Not Available | 699 | Open in IMG/M |
| Ga0102781_1168398 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 668 | Open in IMG/M |
| Ga0102781_1168423 | Not Available | 667 | Open in IMG/M |
| Ga0102781_1173083 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus | 1464 | Open in IMG/M |
| Ga0102781_1173644 | Not Available | 691 | Open in IMG/M |
| Ga0102781_1175261 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | 782 | Open in IMG/M |
| Ga0102781_1175690 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 599 | Open in IMG/M |
| Ga0102781_1178204 | Not Available | 584 | Open in IMG/M |
| Ga0102781_1179786 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 510 | Open in IMG/M |
| Ga0102781_1180843 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 767 | Open in IMG/M |
| Ga0102781_1180854 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 687 | Open in IMG/M |
| Ga0102781_1183877 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 637 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0102781_1001112 | Ga0102781_10011121 | F017397 | YLYPWLVLFFVVAPIMATVIYFQATRLDHCHRTKYSSKMWATLGVDKDDQWCRLGPTVGLISDPIFVCYGVYMVLMSIASFNNPRIGANLIMFENITYFFSSQTAYFWLAIPCVMTMAPDPSALTYDAVTLTIGGLWVEVHMNYIYGHIAAWAPLENNEAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSVKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSIVVGLVRIGTAKKPFEEIERWLGVIMSFVFLSLTAVPSAAMFFHKRVTSIKAKPSLM |
| Ga0102781_1001471 | Ga0102781_10014712 | F018182 | MTSNIQMKDTTDGVVVKADGRTLLAKLVFAGSARLAECDLGIDELRAAFKRAHGDEASKGTLTYQLNENDEDALQLVDDADVVLAKKHGSEPLKITSTEVDTRNVFDHASAELAKHGLDAPATELKKLLDVLQFAPRRLVKCGLAPPKALKKTLKGDEAEEPEDVYVVEMAEALAIEDEPKP |
| Ga0102781_1002050 | Ga0102781_10020501 | F021310 | MTSNNIQMKDTTDGVVVKADGRTLLAKLVFAGSARLAECDLGIDELRAAFKRAHGEEASKGTLTYQLNENDDDALQLVDDADVALAKKHGSEPLKITSTEVDTRDVFDHASAELAKHGLDAPSTELKKLLDVLQFAPRRLVKCGLAPPKALKNTLKGDEAEEPEDVYVVEMAEALAIEDEPKPVTAGLAALQKTANEAAAALDKEADATLDDAALAAKLQAEEYGNHDVVLEAVTGQGIKLDSNTLHALLRMLHCRPARFVRLGLVEDIKAARQAFKLGGKACANEWFRNKGCH |
| Ga0102781_1002591 | Ga0102781_10025912 | F077350 | LEVAVTDSALANQIQKTEADPNQADIQVLLEELESKLRGALDVLNPSVEAMVNNLHKAADEIRKDKDATTLWGTLNDLQVFLSLVQQICTSVGSQGPKVVEFDNALGDSLGALETVVVDAEDPEEVATFIEQSLVRSFDKWSDAEAELRKMADV* |
| Ga0102781_1005641 | Ga0102781_10056411 | F051931 | KGWKYALHVLFVLMMTIMGTSAWVTFLPGTGVNKDPLPPTMREVEDHMELNAETQNPLCLVAFSISASEPRMMVLRNLVGKMMAWVVRRKFVFESQAMTQKVQLFEEESSLKHLHSPTRVRISEDNNMAYTERLKAFYGKYDPMKVDGVAVLLKKYKGKEEELMEELRRKYG |
| Ga0102781_1006269 | Ga0102781_10062691 | F021310 | RTLLAKLVFAGSARLAECDLGIDELRAAFKRAHGDEASKGTLTYQLNENDEDALQLVDDADLALAKKHGSEPLKITSTEVDTRDVFDHAAAELAKHGLDAPSTELKKLLDVLQFAPRRLVKCGLAPPKALKNTLKGDEAEEPEDVYVVEMAEALSIEDEPKPVTTGLAALQQTANEAAAALDKEADATLDDAALAAKLQAEEYGNHDVVLEAVTGRGVKLDSNTLHALLRMLHCRPARFVRLGLVEDVKAARQAYKLGGKACANEWFRNKGCHGRGGKGWGRGLHGRGCH |
| Ga0102781_1006404 | Ga0102781_10064041 | F088935 | MTSIGGLDVAYGARMQVVRTNVMCLALADTGLANATTVPKFILNTYKEALKGTVIEPDFLYIYEVADMDGSGYTTAAVANSLFNQDNSGDGTADVTALEVNGVLRDIRQVPLSKNSAFADTTAAHNSEGDAHTLHNYYDINGNLALE |
| Ga0102781_1012978 | Ga0102781_10129781 | F067833 | TVVMANVFQHHMYVMDHLSSVMQVGDQTVLMAQMKV* |
| Ga0102781_1146035 | Ga0102781_11460351 | F025972 | MWKLLLLTACAAAVELKQKMIIRNTGSEDLAVYFMGALHEGDLSLWDGSETLNDIVSPGQTTARYVRYNDSFAVRSGDLKWRVRLSLYKNDDAEQPYKVTFHNVMTDEKDQPVELKHHAAGYLWIEPNHHVTHSAAQGHEFALRD |
| Ga0102781_1148921 | Ga0102781_11489211 | F060971 | GCDMDNAIPVYDWENWDELTAHHHSHLMHIVQMCTLKRDTEQIDYYADKFMAVK* |
| Ga0102781_1149548 | Ga0102781_11495482 | F028529 | MRLSKFLTEDTETKTVNLTLTFDERSELLRHLEMFDENIDQLHPLVESVQDKLLGID* |
| Ga0102781_1149548 | Ga0102781_11495483 | F005533 | MEYTHNELQLLTLISNINNQFYYIGEEDDKVAPIDVKKFTEHCVAFIDSLEVEK* |
| Ga0102781_1149828 | Ga0102781_11498281 | F041437 | MIPFLIATSFTCSDANVLIDKMNSYNVEEDVRSEMIQVIKEETKECWDAND* |
| Ga0102781_1156291 | Ga0102781_11562911 | F003068 | KDKIMKKILAIVSVLSLFTFSANAIDTSDVSVTAGISANSAVYGATGKETNRDESNAIRDVENESGVFTDSHMSGFLELNVGEFISLGYEHTPDSITTPQNKRVTNQNSETTVSADFNDLNIAYLKLNIPGGVYLKAGYVETDVDVKEKMASGSTYANVSTEGSLIGVGYSQALQGGVAIRLEGSYMELDDVMTSNGVAKDGATVANGGRNQIDVSDMEGLNGKIALTFTFG |
| Ga0102781_1160905 | Ga0102781_11609051 | F011082 | IDDAEARITDLTATIEEATATSARLNTEIKNLGAEISKNQAALDKATAIRQKELAEFNGEEKDVLQSIGALKSAIAVLGKHHTELAQVPAEQLIHVAVLIEGQFRKHKDMVDKITSPAQKKAIAAFVQSPSDYFDAEPTFKQSYAPQSGAIFGILKQMKETFETNLENSQKEEMQSQTAYEDLKATKEAEIKAGSDQKDTKTQ |
| Ga0102781_1168398 | Ga0102781_11683981 | F023863 | MAVRRILTVLALAGLTRAQNPWVNRRKNKDKDAPVAADPAAGDTDFSKLNDMVKNLQQAGAAGGAGGEDMFAGMGDMWESLMDSPEMEEMLANPELLKATIKNNPLINAIPGASEQVEALLQSDAFNDPAQLKQAMRQGVDAMKAVGSEFGSQLGAQMKLAQQNPEAFKAQMEAMMSQLAGG |
| Ga0102781_1168423 | Ga0102781_11684231 | F082819 | ITYNINIHHRGLMSYTKNEVALETLISNVNSFFYYVGEDDDLIPFPRYEIRERLDKYVSQFMQSIEVEGDND* |
| Ga0102781_1173083 | Ga0102781_11730831 | F103401 | LRDLDQHLCHKRVVSLVVVSILLITHILDIKSVNKTINTLFKN* |
| Ga0102781_1173644 | Ga0102781_11736441 | F005911 | KKKRGSRIMCLKQRLLLLLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSLKAKIDGSDTNQARLGTVNEDDLEAPIDDVFHNGKFITLAVMVKKAVIIAADDPTATARAGVDTAYDQEKSGVLIKYADSDGNPIAPTETGLAGDTLVADVQLFVNLAGTPDATSNTPYADGEAFYYILMETNESGLTADDITVNLSQFPAGILSTNDGG |
| Ga0102781_1175261 | Ga0102781_11752611 | F103879 | QGNQNFVIDSQTCYDTYAHEFAEQLGDRLSPAGYRTQLERVDSGLEQHNPESRLMTHFRRVLQKDKTTVGIGKSWVSTTRSGLSRIVDSRGALKRKREKETRLSLRNWSYRQELALDRRTMYWRERKKMRLYSLEYNLNNVTDTDHNQNSRVTRLYFRDALIESRQKRQLRVSLEPSTYDTFATRKLVVRARKPVAEPSELLAGDIISVWFDWAKTA* |
| Ga0102781_1175690 | Ga0102781_11756901 | F041790 | RFSSSYATAAPKTDATISARIMSEGSIRRDYGLLLRVTDDWDDSFRYQPRAGYRCTVNTGRDGKADSTISVEVLREDGSRSTIAGLNAPAFTLEPGTWYAVSGSAIGNHIQCRIFGATGLLGGAGAFDDTYGDGYFATWNYKDDSGPHWWGDLRINDVPPPAARRLRGSR* |
| Ga0102781_1178204 | Ga0102781_11782041 | F013133 | TISGDGWVVSTNLSDGSVNIEEAKYSWTVLEDVLTLTFGSQAEPYGLAWGLHRPSNNWFVSNPRDHSITNGVGIGLNKWGVGADLFYGGSTEDVLDEEGVVTEEGSQYWSSRFSYGLSFAGIDSKFGLSLNSNEAQLVDVSLGNSLFTTSFEYDLSEEADGAYWMRGVVTPPQAQGAFLLLGYNSDEVVTYGVG |
| Ga0102781_1179786 | Ga0102781_11797861 | F037241 | LYKMRRLLLPLLLASTTAAKSTYWKEVEAKKRRPAAAAYCPKRCFTTEASGDEKREVADLTCCSSAQGTIFELAAFVAATTETAVRGFSLGFGYVLVKATLRAADSDEGPRSGHDFGPAYRFARMAGLGVACSFVGLSMFVPVGLRLGHRLA* |
| Ga0102781_1180843 | Ga0102781_11808431 | F022419 | MSLRYAALLAPACAFTHPQQPRRVVVRRDYSSIDDVFDSVFGDPWSPFGLSRRDPWGMRRRSPLAQQFGQLKRLSQAFEEQLQRVDEDDFLVDTPLGQRRQLGTAKEDAPTKTDDSTSSLYEAPATKDCDAPCCDEAVAPAAPRGYAYSWSSSSVTQNGETRTTVRKNFKDADGGAKSFQERSLARDGKKLTETRTQGFGD |
| Ga0102781_1180854 | Ga0102781_11808541 | F017306 | LSQRTEDHGIADAYLVVVSTASDELVHEFCAYSSAYGGPVRPDPVTGLRAEPTGGGRATVRWEWSENSFDLASPGASFERDVILEPLAWAGPVRKTPKTKPVTPAPKVDVSQELLAKDVAVKSEWRQNGCDDEWEIHVSHAATGTKLVWKGTSTAENQDIKKLRHVGADGMVRVDFAYYVGENGNNSSSDRSLFVKLGETGLEWVPKHVCSGRLYDGRCSGCK* |
| Ga0102781_1183877 | Ga0102781_11838771 | F056636 | LWVEVHMNYIYGHIAAWAPLENNEAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSWKILFASKDASRWASFDSINAITTAKLWVLTMMVMLSSSVVVGLVRIGTAKKPFDEIERWLGVVMSFVFLSLTAVPSAAMFFHKRVTSIKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRAQNAGF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |