NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007589

3300007589: Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_2 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300007589 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0103597 | Gp0123887 | Ga0099766
Sample NameActive sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_2 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size55390647
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria
TypeEngineered
TaxonomyEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationAustria: Klosterneuburg
CoordinatesLat. (o)48.3Long. (o)16.2Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001758Metagenome / Metatranscriptome640Y
F025291Metagenome / Metatranscriptome202N
F051952Metatranscriptome143N
F059886Metagenome / Metatranscriptome133Y
F070166Metatranscriptome123N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0099766_1013033Not Available1095Open in IMG/M
Ga0099766_1025686Not Available875Open in IMG/M
Ga0099766_1028301Not Available767Open in IMG/M
Ga0099766_1030288Not Available546Open in IMG/M
Ga0099766_1170325Not Available759Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0099766_1013033Ga0099766_10130332F070166RTKRITLQRFLVSKIAYGKDFSLTELAALFHNQLWLQVKCETDIHFKEKFGSSLEDLAKILKECNFSRGLQPGTISRMKAKVLALEGDFLIPQRNLPNLEAQLRNSITTKWRKQEGIEINKLPPKSFIGKGYRDHGTAPSPEIDGTPSWQEVGSEFSNLEREHTEAFLFLLKVIDNDPNVSIQERLQGLKRAIEVAERIKRIHPNWRNSQITEASKGRIIDAKKVKKVIP*
Ga0099766_1025686Ga0099766_10256861F051952MPKFPRQTIAPDHFTTTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGPEVFTFRAVFTSLEDVVSANPQDRLNRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLKVLTRFPKKFKPKAFVGKGYGDHGTAKDMAYDGSPSWQEVAMADTNLGTSDTSKTDYLEFLFRNFNTNRVQLFPQKKPGEKLHSSSN*
Ga0099766_1028301Ga0099766_10283011F059886VIYASRTAFADLRGERHQLSPTIPRSPGIIPAVLSVAPFRPLRFDCS
Ga0099766_1030288Ga0099766_10302881F051952WRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVFTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLKVLTRFPKKFKPKAFVGKGYGDHGTAKEMAFDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFR
Ga0099766_1170325Ga0099766_11703251F025291QPNQRRKQVTNGKTKHHMVNLQREINIFRESAWRVITYNYHLGDHSSTGLYTLNVGADQRYMSFQTLLTTDEFQNMSIVYNEFKIHKAVFTSLPTTNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKATTAQSCEWNLKGLGPNFGIWLDTGATIPGQFQIGNYIFGSIPMNLGWEVKFQLVVEFTNPK*
Ga0099766_1177572Ga0099766_11775721F001758GWRGPSQAGAQVPGAEAGFTSSSGTFARVSYAKKELGDQERLETVPSRIK*
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