Sample 3300007536

Basic Information
IMG/M Taxon OID	3300007536 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125930 \| Ga0102943
Sample Name	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_C_black_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_C_black_MG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	667979717
Sequencing Scaffolds	25
Novel Protein Genes	27
Associated Families	17

Dataset Contents

Total Genome Size

667979717

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
Not Available	18
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Ecosystem Assignment (GOLD)

Name

Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → wetland area → soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4958	Long. (^o)	-122.1331	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

South San Francisco, USA

Coordinates

Lat. (^o)

37.4958

Long. (^o)

-122.1331

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F005874	Metagenome	387	Y
F007787	Metagenome	345	N
F011947	Metagenome / Metatranscriptome	285	Y
F015419	Metagenome / Metatranscriptome	255	Y
F027794	Metagenome / Metatranscriptome	193	Y
F032166	Metagenome	180	Y
F036102	Metagenome / Metatranscriptome	170	Y
F038111	Metagenome	166	N
F050177	Metagenome	145	N
F056354	Metagenome	137	N
F063375	Metagenome	129	N
F071990	Metagenome / Metatranscriptome	121	Y
F073153	Metagenome	120	N
F075754	Metagenome	118	N
F100426	Metagenome	102	Y
F100427	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102943_1000464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	27246	Open in IMG/M
Ga0102943_1000622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	23666	Open in IMG/M
Ga0102943_1001421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	15009	Open in IMG/M
Ga0102943_1013567	All Organisms → cellular organisms → Bacteria	4025	Open in IMG/M
Ga0102943_1016722	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	3556	Open in IMG/M
Ga0102943_1078147	Not Available	1405	Open in IMG/M
Ga0102943_1086431	Not Available	1322	Open in IMG/M
Ga0102943_1088387	Not Available	1304	Open in IMG/M
Ga0102943_1091098	Not Available	1280	Open in IMG/M
Ga0102943_1093743	Not Available	1259	Open in IMG/M
Ga0102943_1100683	Not Available	1205	Open in IMG/M
Ga0102943_1110916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1135	Open in IMG/M
Ga0102943_1119732	Not Available	1084	Open in IMG/M
Ga0102943_1125536	Not Available	1054	Open in IMG/M
Ga0102943_1129957	Not Available	1032	Open in IMG/M
Ga0102943_1146112	Not Available	962	Open in IMG/M
Ga0102943_1220030	Not Available	755	Open in IMG/M
Ga0102943_1257723	Not Available	688	Open in IMG/M
Ga0102943_1275019	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	663	Open in IMG/M
Ga0102943_1325210	Not Available	603	Open in IMG/M
Ga0102943_1355837	Not Available	573	Open in IMG/M
Ga0102943_1372197	Not Available	559	Open in IMG/M
Ga0102943_1375723	Not Available	556	Open in IMG/M
Ga0102943_1435978	Not Available	512	Open in IMG/M
Ga0102943_1437975	Not Available	510	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102943_1000464	Ga0102943_100046434	F001506	MNKILFSNRCKCNEEISVIKKRKSTSRSEGKPLQYPKSAEIKWKTFRIKHDGKLSLIAKFILNSFQNKYIYYGIDDILYQFGLSSTEYETLLAILYSPVISLQNNYSVNFFDIWISEIYVEEDSKPNKFLTKKDQTLSQFTYITLKFFYKTKVPTKKQASLW*
Ga0102943_1000622	Ga0102943_100062212	F001506	MNRILYKSRCRCNEEFSITKKRKLSTRREGKPLQYPKPNEVVSKTFQIRYDKKLSPTAKLILNSFQNKYIYYAIDDILYSFKSNSRERENLLAILYSPVLSLQNNFSINFFDIWIHEIYIHEISKVNKFFKNDFSNFEQLNYITIKLLYKTRTPVKKLDSLW*
Ga0102943_1001421	Ga0102943_100142117	F001506	MNQILFDNRCKCNEEISVVKKRKLTTRSEGKPLQYPKSTEIKCKTFQIKYDGKLSLLAKFILNSFQNKYIYYGIDDILYQFRFDSNEYERLLAILYSPIISLQNNYSINFFDIWVNEIYIEEDSKPNKFLSKESQPLSQFTYITVKFFYKTKVPTKKQESLW*
Ga0102943_1013567	Ga0102943_10135671	F011947	VEAGSSELLDGHIIRYSRGSQFIVRLEDGREIKAIPLLEALEEAECSSASIINRRVQVRMCKHPKFHRIIKIGRPNQ*
Ga0102943_1016722	Ga0102943_10167228	F015419	MKMKLELKITDESGNKSTYDIERSHPDQPNNLNDFILKALSFSEDKRRLPFLIQCPNGLEVCPEIKMKFGNYGSPLLGDGVESLVVHWE*
Ga0102943_1078147	Ga0102943_10781472	F056354	DMILSVFIALSMTAVVITGLAIRGDIPELLGAAVAAIMSIVAGLNALDLFVITNSGNVKDIAPQTDIALILLVIFVINLIFIFDRAFSPGS*
Ga0102943_1086431	Ga0102943_10864314	F075754	WEPIHVRVDDSSEWYRTQVERGDYLRDTEEDAEMSHREHGLVAEAIVKAVFPGFEWWDTESFDLFRGQTRYDIISRNINRGEPRQNYLHHLLPKKEARAKPSTNYYAVVRKHPDYWLIGHINSERFWYLCDRTRPEWWNEGTYEGGHLTYEHFKQIKTGVGITPPPAIEVFGQG*
Ga0102943_1088387	Ga0102943_10883871	F063375	MTAVELSDRQVTTIETVGGHLQTVIAYGGVFMGGVIIGFESSDYPMMWPITQSYTGKAVTYPYTQLLEMGIGILAVCVMM
Ga0102943_1091098	Ga0102943_10910983	F075754	MISYQAGIRWHTPVNPWEPIHARVDDTSEWYAAQVGRSEYLRDSEEDADMHQRKGGVVAEGLVKAIFAGMEWWDTHSFDTFLGGTRYDIISRGLNRGEPRQHYVHKIQAKKEERAKASTHYYAVVRNHPDYWLIGHINSVRFWYLCDRSAPEFWDDEQFDGGFLSYEHFEQLPLGEPISPPPGIEVFGQG*
Ga0102943_1093743	Ga0102943_10937433	F005874	MAMIPNDPPDDELTPRQLYDRFEDAVNLDVEELRAFKASEYNEAYNSVKSEAAQPGDEPLDDVIRLSETPASMWRDVNDGFNEVEEARELLDFQRRTQAQIKSQGLGENYLTEARNMQKREAASIRWGIDPDDEREWL*
Ga0102943_1093743	Ga0102943_10937435	F063375	YIKMTAVELSDRQLTAIETVGGHLQTVIAYGGVFMGGVIIGFESSDYPMMWPITQSYTGKAVTYPYTQILEIGIGILAVCVMMIILLEWVVYLHER*
Ga0102943_1100683	Ga0102943_11006834	F056354	MILSVFIALSITAVVITGLAIRGDIPELLGAAVAAIMSIVAGINALDLFVITNSGNVKDIDPQTDIALILLVIFVINLIFIFDR
Ga0102943_1110916	Ga0102943_11109162	F100426	MARNRIIYASQSVWAEGEVLYRVQSLGTTTTFTSEDIFELGHLDIIDVVDDVPAVAVTLNTNDFGDVATLALLA
Ga0102943_1119732	Ga0102943_11197323	F056354	MIVEVFIALSIFATVITGMAIRGDIPELLGAFVGAVMSIVAAINALDLIVITNSGNVKNLDPQVDIALVLLLIFIVNIIFIFDRAFSPGE*
Ga0102943_1125536	Ga0102943_11255362	F005874	MGYGIPDDPPDRDLTPQQLHDRIDEVTNLSADELRAFKDSDFNEAYNMAKSDAAQPGDEPLDDVIRLLETPASEYRDVDDGFNEVEEGRELLSFQRRTQAQIESQGLGENYLTDLEVMQVREAASIRWGIDPDDEREWL*
Ga0102943_1129957	Ga0102943_11299573	F073153	SRERRRSPMSEQDLPVRDEIRRIDGNIEGILTRLGNQSETIARIDLLVEEMQEMQTELEHIEVRLNTLESRID*
Ga0102943_1146112	Ga0102943_11461121	F032166	AKDEPLDDVIRLLSTPPEAWKDEDDGFNEVQEAEELLDFQRRTQAQIASQGLGMNFLGDDQDMTMREAASIRWGIDPDDEREWL*
Ga0102943_1220030	Ga0102943_12200301	F036102	MERTEMMELFGATADINTKKGMEAYRAFAAALTTPILKKIELESVMRQLFTVEQLGPGAQAVYPVAEDFEIPVWVLPGLGYVAQNFIEGIGEEV
Ga0102943_1257723	Ga0102943_12577232	F007787	MGKTKELAVMLKAESFEEMQFAQDFTKKEAKAKGQELAKTILDNGNANPLEVMATLSRLTEVINTFSETLKKDLNIPENETTLNGVHFKTRRGYPIYDYKQDGMINHYETLLKQRKDLIKQASKTGKPAVDPNNGEEIEGVPVKGYTKDSIVITF*
Ga0102943_1275019	Ga0102943_12750192	F100426	MARNRIIYASQSVWVNGEVLYRVQSLGTTTTFNSEDIFELGHLDIIDVVDDVPAVAVTLNTNDFGDVKTLATLAQIAPAKIMMDA
Ga0102943_1325210	Ga0102943_13252101	F032166	PLDDAIRLLETPGYEYSAVDDGFNEVEEARELLDFQRRTQAQILSQGLGENFLTDARDMQMREAASIRWGVDPDEEREWL*
Ga0102943_1335124	Ga0102943_13351242	F100427	IATDIEWDVWGNELEIEHIATPWAMRWAIVASMAPLLVGTVVLMYWLSTQPAVTTHSAIMGIGLAIYTFAGGKADYGRLTDAVTTRLA*
Ga0102943_1355837	Ga0102943_13558372	F050177	MARVPSDPPDDALTPQQLADRVDDVVNLTVEELEAFRESEYNEEYLEYNSERAQRGNEPLDDVIRLLDTPRDEWRDVDDGFNEIAEARELLDFQRRTQAQIKSQGLGTNTIAEYDDMTFREAASIRWGIDPDDEREWL*
Ga0102943_1372197	Ga0102943_13721972	F032166	RLLDTPRDEWRDVDDGFNEIAEARELLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL*
Ga0102943_1375723	Ga0102943_13757231	F071990	VSTGAGNELDFSTVDISGGAANSGVKMCLWDVTADGGNTTVETFKLWLSSNGFDREGTVVKFQPLSGGDQGSPSLTENYVANATTSSYTWANMPEDDEPGTINVYPSDEGTAMALSTTSDDVVMWASYVAVASEETTGTYSGTTSGYEFQFSFKYSYS*
Ga0102943_1435978	Ga0102943_14359781	F027794	QMMQYLRNVAEADANDEIANAASSLAFRLESAGTSVFDMPMQFDAWTELDQAVARYAIDKRNRYVLHVGAKHAVDTHKEMI*
Ga0102943_1437975	Ga0102943_14379752	F038111	MIHRAPVVNRDDYTIWLENYRNIANFIHAEVYKYNKTTREEFGKDLDRLMDLHQNPLYVLTEKSNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007536: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_C_black_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences