Sample 3300007532

3300007532: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_H2O_MG

Overview

Basic Information
IMG/M Taxon OID	3300007532 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125936 \| Ga0102942
Sample Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_H2O_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	398769257
Sequencing Scaffolds	51
Novel Protein Genes	59
Associated Families	25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	27
All Organisms → Viruses → Predicted Viral	9
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Pyrstoviridae → Hatrivirus → Hatrivirus HATV3	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum persicum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → Viruses → environmental samples → uncultured virus	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	2
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → pond → saline water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4965	Long. (^o)	-122.133	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005874	Metagenome	387	Y
F015039	Metagenome / Metatranscriptome	258	Y
F026202	Metagenome	198	Y
F038111	Metagenome	166	N
F041612	Metagenome	159	N
F044223	Metagenome	155	N
F054054	Metagenome / Metatranscriptome	140	Y
F062489	Metagenome	130	Y
F065465	Metagenome	127	N
F066493	Metagenome	126	Y
F072017	Metagenome	121	Y
F075075	Metagenome / Metatranscriptome	119	Y
F079661	Metagenome	115	Y
F085171	Metagenome	111	N
F089905	Metagenome	108	N
F089940	Metagenome	108	Y
F090210	Metagenome	108	Y
F094957	Metagenome	105	N
F097996	Metagenome	104	N
F098765	Metagenome	103	N
F098766	Metagenome	103	Y
F099341	Metagenome / Metatranscriptome	103	Y
F099972	Metagenome	103	Y
F100063	Metagenome	103	N
F104555	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102942_1002071	Not Available	7612	Open in IMG/M
Ga0102942_1003468	Not Available	5914	Open in IMG/M
Ga0102942_1005406	All Organisms → Viruses → Predicted Viral	4730	Open in IMG/M
Ga0102942_1005575	Not Available	4661	Open in IMG/M
Ga0102942_1006011	Not Available	4476	Open in IMG/M
Ga0102942_1010961	All Organisms → Viruses → Predicted Viral	3276	Open in IMG/M
Ga0102942_1017858	All Organisms → Viruses → Predicted Viral	2522	Open in IMG/M
Ga0102942_1023763	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Pyrstoviridae → Hatrivirus → Hatrivirus HATV3	2154	Open in IMG/M
Ga0102942_1023996	Not Available	2143	Open in IMG/M
Ga0102942_1024948	Not Available	2096	Open in IMG/M
Ga0102942_1026553	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2025	Open in IMG/M
Ga0102942_1028262	Not Available	1954	Open in IMG/M
Ga0102942_1030409	Not Available	1876	Open in IMG/M
Ga0102942_1031397	Not Available	1843	Open in IMG/M
Ga0102942_1037256	All Organisms → Viruses → Predicted Viral	1667	Open in IMG/M
Ga0102942_1038145	All Organisms → cellular organisms → Bacteria	1645	Open in IMG/M
Ga0102942_1043047	All Organisms → Viruses → Predicted Viral	1534	Open in IMG/M
Ga0102942_1047059	Not Available	1455	Open in IMG/M
Ga0102942_1047277	All Organisms → Viruses → Predicted Viral	1451	Open in IMG/M
Ga0102942_1048574	All Organisms → Viruses → Predicted Viral	1428	Open in IMG/M
Ga0102942_1049649	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1409	Open in IMG/M
Ga0102942_1058213	Not Available	1281	Open in IMG/M
Ga0102942_1064710	All Organisms → Viruses → Predicted Viral	1199	Open in IMG/M
Ga0102942_1073003	Not Available	1110	Open in IMG/M
Ga0102942_1084894	All Organisms → Viruses → Predicted Viral	1009	Open in IMG/M
Ga0102942_1089366	Not Available	977	Open in IMG/M
Ga0102942_1101282	Not Available	901	Open in IMG/M
Ga0102942_1103526	Not Available	888	Open in IMG/M
Ga0102942_1107151	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum persicum	869	Open in IMG/M
Ga0102942_1128507	Not Available	770	Open in IMG/M
Ga0102942_1130082	Not Available	765	Open in IMG/M
Ga0102942_1133948	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	750	Open in IMG/M
Ga0102942_1134061	Not Available	750	Open in IMG/M
Ga0102942_1139559	Not Available	730	Open in IMG/M
Ga0102942_1143389	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	717	Open in IMG/M
Ga0102942_1147003	All Organisms → Viruses → environmental samples → uncultured virus	705	Open in IMG/M
Ga0102942_1147986	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	702	Open in IMG/M
Ga0102942_1150610	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	694	Open in IMG/M
Ga0102942_1158470	All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	671	Open in IMG/M
Ga0102942_1159507	Not Available	668	Open in IMG/M
Ga0102942_1162943	All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	659	Open in IMG/M
Ga0102942_1163865	Not Available	657	Open in IMG/M
Ga0102942_1167766	Not Available	647	Open in IMG/M
Ga0102942_1172257	Not Available	636	Open in IMG/M
Ga0102942_1172420	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	635	Open in IMG/M
Ga0102942_1174525	Not Available	630	Open in IMG/M
Ga0102942_1174951	All Organisms → Viruses	629	Open in IMG/M
Ga0102942_1194999	Not Available	586	Open in IMG/M
Ga0102942_1202130	Not Available	573	Open in IMG/M
Ga0102942_1208609	Not Available	561	Open in IMG/M
Ga0102942_1233106	All Organisms → Viruses → environmental samples → uncultured virus	522	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102942_1002071	Ga0102942_100207115	F089940	MKFLSAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSGILFAIEVDE*
Ga0102942_1003468	Ga0102942_10034682	F089940	MKYIAVFLIVLGLGIISGAETHDWFPMFAAQIALGTATLFSGGLFATLIDTEED*
Ga0102942_1005406	Ga0102942_10054061	F100063	MSETCEVCGQFTGQTESFDLWIRGLDRRGEGERIETDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNGTPDGELRYVVMIRDEIETDSDTEEVEIDTNSVQLHPITGNHLPESIDGYVIGKID*
Ga0102942_1005575	Ga0102942_10055753	F038111	MIHRVPVVNRNDYTIWLENYKNIANFIHAEVYKYNKTTREAFGKDLDKLMDLHQNPLYVLVETDNNKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV*
Ga0102942_1006011	Ga0102942_10060112	F005874	MIPTDPPDDELTAEQLYERFDAAVNVTADELREFQDSLYNEAYIESNSEQAQPGDEPLEDAIQLLDTPADEWRDLDDGFNEVDEAEELLDFQRRTQGQIEAQGLGENYLTDARDMTKREAASIRWAIDPDTEREWL*
Ga0102942_1010961	Ga0102942_10109616	F065465	MTEDITVVCECDVLDEARSMGYRRYADMPAADIVAAWPVHYTEHGSWDSHILPTLRCLAGYGDRGYGTYQERQDVALIQDGDEADMPADAIILDSSHLLDDIIVSWQDGAHTAVTDTLRQSDEYSLEDIQR*
Ga0102942_1017281	Ga0102942_10172815	F104555	MRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIEHNGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVSDCF*
Ga0102942_1017858	Ga0102942_10178589	F015039	MAVDNTRRIYVTVALEILRDADEQDVVAECDYAFEHADIVDTEIVSISEETAY*
Ga0102942_1023763	Ga0102942_10237635	F079661	MTNDTTTIEIGTELRDELRKERKPHESSYGDTIERLLGASSGGQLWTEQEIKDIVDRRVEELGGGRR*
Ga0102942_1023996	Ga0102942_10239962	F062489	MTGPDAIVIREEVTAGPTRRYVYHPLAAGGYERKTQLWRQATDGWHTTGTEVVESLAIDCPDGRR*
Ga0102942_1024948	Ga0102942_10249482	F038111	MIHRVPVVNRDNYTIWLENYKNIANFIHAEVYKYNKTTREDFGKDLDKLMDLHQNSLYVLTESDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV*
Ga0102942_1026553	Ga0102942_10265534	F085171	MSETGRKGHTDLDGLIDLDSRSLIKLGNSAVVSIPSADDLGIIGNIDDLDAAVSVRCVESNQIVIEARVDLSNVDLGDIDLTVD*
Ga0102942_1028262	Ga0102942_10282622	F089940	MKYAAAFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTEEDDT*
Ga0102942_1030409	Ga0102942_10304091	F089940	MVSTVKERRNYTMKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDDDDN*
Ga0102942_1031397	Ga0102942_10313973	F038111	MIHRVPVVNRNSYTIWLENYKNIANFIHAEVYKYNKTTREEFGKDLDKLMDLHQNPLYVLVETDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV*
Ga0102942_1037256	Ga0102942_10372563	F079661	MSNTTIQIPESVRDELKDERLPHESNYGDTIERLLGDSTGGQLWTEQEIRDMAQQEIEQVTRR*
Ga0102942_1038145	Ga0102942_10381453	F089905	MRTVREIEQDIREAEEAQAETEFSSTSWDSLNAEITGLHRELKRATYHWDRLRLCGMMGVDTYTR*
Ga0102942_1043047	Ga0102942_10430473	F089940	MKYLSAFFIVLGLSIVIGAEAQDWFPMFAAQIGLGVVTLIAGGLFASQIEIENE*
Ga0102942_1047059	Ga0102942_10470592	F089905	MRTVKEVEQDIREAESAQAETEFSSTMWDSLNAEITGLHAELKRATYHWDRLKLCGMMGVDTHTR*
Ga0102942_1047277	Ga0102942_10472772	F089940	MDSTVKERRNYSMKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTTISGGLFATLIDTSEE*
Ga0102942_1048574	Ga0102942_10485742	F089940	MKIISAALIVLGFGIIAGAETHDWFPMFAAQIALGTTVLISGGLFATQINDDEEEVE*
Ga0102942_1049649	Ga0102942_10496494	F089905	MRTVKEIEQEIREAESAQAETEFSSTMWDSLNAEIIGLHAELKRATYHWDRLKLCGMMGVDTHPR*
Ga0102942_1058213	Ga0102942_10582135	F089905	MRTVREIEQDIREAESAQAETEFSSTMWDSLNAEIIGLHAELKRATYHWDRLKLCGMMGVDTYTK*
Ga0102942_1064710	Ga0102942_10647103	F099972	MPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEIMKALEALSTEAKKDLEEKLNDL*
Ga0102942_1073003	Ga0102942_10730033	F066493	MSQTREWDSGVVAVADELVQEHGPEGAIDRLQTRRQTESDELQARCTEAIAWIRREVLGDE*
Ga0102942_1084894	Ga0102942_10848943	F094957	MKALTQYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGELTREEVEARTNTWLDAITELDAIEQELTA*
Ga0102942_1089366	Ga0102942_10893662	F066493	MTERREFDDGLIDVADELVKEHSADGAIDRLQRRRESTRSEDLEARCLEAIAYIRREVQDDT*
Ga0102942_1101282	Ga0102942_11012822	F094957	MKALTQYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGTLTREEVEQRTNTWLDAITELDAIEQELTA*
Ga0102942_1103526	Ga0102942_11035264	F099972	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVEMLDALESLSEEAKQDLERKINENN*
Ga0102942_1104862	Ga0102942_11048622	F041612	VRAGLRVRDGDGVVARASATDTAPLAVTQQIDPAAHGGVGGAGAVTIETG*
Ga0102942_1107151	Ga0102942_11071511	F066493	VSQSREWTDGVIDVADELVQEHSAEGAIERLERRKESTRSDDLEARCREAIDWIESEVQGDD*
Ga0102942_1128507	Ga0102942_11285071	F044223	MSDKTTIGLKVSHERNARIERKVDDEGYRSRQAYIRELIDDDLGGFDTTVESTTTEHTPDDRRDADIYEALLDCIPLKGWTRFDRFKGDIAQATGYGKDALFGELKSLRRNGYCTIRVLNPTDKNPHYEIKLKPPAADPELWTHRETDDRPDVFAPGVPDHETNTEKHQLIAAIDDG
Ga0102942_1130082	Ga0102942_11300821	F097996	MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLKSLVTQLNVIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRD
Ga0102942_1133948	Ga0102942_11339482	F085171	MSEARKRTHTDLEGLIDLDSRSLIKLGNSAVVSIPSADDLGIIGNIDDLDAAVSVRCVEPHQIVIEARVDLSNVDLEDIDLGVD*
Ga0102942_1134061	Ga0102942_11340612	F066493	MSQSREWTDGVIDVADELVQEHSAEGAIEHLQRRRQTSDDELQARCNEAIAWIRREVQ
Ga0102942_1139559	Ga0102942_11395592	F041612	AGLRVRDGDGVVARASATDTAPLAVTQQIDPAAHGTVGGAGGVSIETA*
Ga0102942_1143389	Ga0102942_11433892	F038111	MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLNLLANLHNSPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVY
Ga0102942_1147003	Ga0102942_11470033	F072017	MSLNQTPSPDSQSDTDIKSTVHKHDAIHRLTQEHIDVLTADDRLLDFYEWQQVIRSSETTVRRLAYSEIEEGVDQ*
Ga0102942_1147986	Ga0102942_11479861	F026202	MKSVVSCDAASKATVLSMGSLELLLRTSILAVLDLNEMGGTTLPGEVLGASLSGLVSCG*
Ga0102942_1150610	Ga0102942_11506102	F054054	IPALDINRITGRKKDFTDLCVYFALAEYIYPTVADFGNEEDSERNKMAYYTNKYEGLYQELVTSGDWYDWDDDGEITNKEKDPGKINLKRLR*
Ga0102942_1152313	Ga0102942_11523132	F098765	VRAGLRVRDGDGVVARASATDTAPLAVTQQIDPAAHGGVGGTGGVTIETG*
Ga0102942_1156322	Ga0102942_11563221	F090210	YWYVDDEDSEVGLVLDHCMIIERYAFAGEARAQLEEVAQERPILYKLLGIKPKWGIDFSLDYVSQDICMEVMHVEQDFLSIEEAVEAKQKLEHIIETTDWEAGAQELIKRKSEWYNLSSDDHSDYKAQFFGWHRAFDNRKVFSG*
Ga0102942_1158470	Ga0102942_11584702	F098766	MSHPRCAICGYEAYGDDHVRVEVERVPPEKPPETYYFHTRCFD
Ga0102942_1159507	Ga0102942_11595072	F089905	MRTVREIEQDIREAESAQAETEFSSTMWDRLNAEITGLHRELKQATFHWDRLKLCGMMGVDTHPR*
Ga0102942_1159977	Ga0102942_11599771	F090210	EDESEKGLVLDHCMIIERWAFAGEAREQLEEVAKDRPILYKLLGIKPKWGIDFSLDYVSQEICMEVMHVEQDFLTVEDALAAKQKLESIVDNTDWEAGAQELIARKSEWYDLSSDDHSDYKAQFFGWHRAFDNRKVFS*
Ga0102942_1162646	Ga0102942_11626462	F104555	MRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRRAIRRSIEHNGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVSDCF*
Ga0102942_1162943	Ga0102942_11629432	F098766	MSHPRCAICGYEAHGDDHVRVEVERVPPEKPPETYYFHTRCFDRVQDWERDL*
Ga0102942_1163747	Ga0102942_11637471	F104555	MRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIDANGIQATGEHWASVLDTIGPVPQLYLDTVKIIFNQEVAECF*
Ga0102942_1163865	Ga0102942_11638651	F099972	KANKGKRLLNLPEASQYSAWSYWRGVEHGRREGRAEVLKALESLSADIKKDLENKISDL*
Ga0102942_1167766	Ga0102942_11677661	F099341	SLNVNSVTAGDIFIGGSQITAISGDPINIQANIVYRGSVLGIPLAYQYFLR*
Ga0102942_1170703	Ga0102942_11707032	F075075	MATNTDGMHPRYLGFQVDWPVFVKMPFSADGHAWKRQEHFNWAERGIDQKQVATLYATGHIYHNYELEKQNKVGDRLGELNSEQLK
Ga0102942_1172257	Ga0102942_11722571	F066493	MSQSREWTDGVIDVADELVQEYSAEGAIERLQRRRQTSDDELQARCNEAIAWIRREVQSDE*
Ga0102942_1172420	Ga0102942_11724202	F079661	MSDTTIQIPESVRDGLREERLPHESSYGDTIRRLLGDSDGGQLWTEQEIRDIAKDEIRDVERAHSKQF*
Ga0102942_1174525	Ga0102942_11745251	F066493	MSEREWHDGVVDVADELVQQHSAAGAIERLQTRRQTASDELQARCTEAIAYIRREVMDDQS*
Ga0102942_1174951	Ga0102942_11749512	F062489	MGPDAIIIREDVRDGPTRRIVYHPLTTGGYERREQLWRLSIEGWHTTGTEIVEELAIDPPEGER*
Ga0102942_1194999	Ga0102942_11949992	F015039	MAVDNTRRIYVTVALEVLRDADEQDVVSECDYTFEHADIVDTEIVGVRETEE*
Ga0102942_1202130	Ga0102942_12021302	F066493	MSQSREWTDGVIDVADELVQEHSAEGAIERLQRRKESTRSDDLEARCREAIDWIEAQVIDE*
Ga0102942_1208609	Ga0102942_12086091	F066493	MTEQREFDDGLIDVADELVSEHSADGAIDRLQRRRESTRNEELENRCLEAIAYIRREVKDNES*
Ga0102942_1233106	Ga0102942_12331061	F072017	MSKSTTSSLDPESDTDIKSTVHKHDAIHHLTQEHIDVLDEDDRLLDFYEWQQIIRASETTVRRLAYDEVQQ*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007532: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_H2O_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences