NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300006987

3300006987: Marine viral communities from Cariaco Basin, Caribbean Sea - 24_WHOI_OMZ



Overview

Basic Information
IMG/M Taxon OID3300006987 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0067852 | Gp0122841 | Ga0098063
Sample NameMarine viral communities from Cariaco Basin, Caribbean Sea - 24_WHOI_OMZ
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size78994322
Sequencing Scaffolds6
Novel Protein Genes8
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCaribbean Sea: Cariaco Basin
CoordinatesLat. (o)10.847Long. (o)-65.114Alt. (m)N/ADepth (m)237
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002697Metagenome / Metatranscriptome536Y
F030463Metagenome185Y
F039681Metagenome163Y
F044724Metagenome154N
F052647Metagenome142N
F066855Metagenome126N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0098063_1000764Not Available6021Open in IMG/M
Ga0098063_1008804All Organisms → Viruses → Predicted Viral1481Open in IMG/M
Ga0098063_1012437Not Available1172Open in IMG/M
Ga0098063_1021027Not Available824Open in IMG/M
Ga0098063_1027470Not Available688Open in IMG/M
Ga0098063_1030182Not Available647Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0098063_1000764Ga0098063_100076412F052647MEILDFMPLIYVSVILTGAYFIGKLLLNHMTQLKKVKRGIEVQKEKKSFENGLEDLIDNSPEMYVKVMQELEHLKTNGADEKQMSSLQRKADLLKMVVENQEIINLAGKPLFRVLGKFVGNIGR*
Ga0098063_1000764Ga0098063_100076413F039681MSTSTGFEIGDPTKLRIKPTYNVGDYGHDVSFPLLLSQATNLVTLTPSTSSFHQTQHDSANPIDEVLSFISESDKCELLHNGNDTDFDKTWLIQPDMSFFSYKIALSFGIGLKVSAYTSGNITAESIRLTLTELGDGVGDIVIADLTIPTGASALSATGEQIIMFHADILQKIKFTNNRPVTMRIRTVSSKSGTATYQIGMLPVYPMIPTAVPKQWLLSQVEIHAHASLDHAFPIWRDSDNDQRLDYSGCSPSGCNSALDEMGSV*
Ga0098063_1000764Ga0098063_100076414F044724QTLIECVPFMASTAGLTAGQTYLTKCIIESNSINLLPKVFQVPPILGGLGVFTNSLTPMLDAVECNTPLQLGATQQFRIYGQNFIANTVANRLGLGLHYSESVTNMKEKFYDMPTNETNTGTAATSVAGENVTINDGVFLEDIMPTVVSGVVTLSESYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHYTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKS*
Ga0098063_1008804Ga0098063_10088041F052647VGLTATYFIGKLILGHMTQLKKVKRGIEVQKEKKSFENGLEDLLDNAPDMYVKVLQELEHLKANGADEKQMSSLQRKADLLKIAVENQEIINLAGKPLFRVLGKFVGNIGR*
Ga0098063_1012437Ga0098063_10124373F066855MKIFTKSRVANFTAGVVILYTVYAVVFQEIQTEYLAILSGLRGVSAKFLWDSTSDHMDK*
Ga0098063_1021027Ga0098063_10210272F002697MTKQIKYFSWFMKSRNKFATCRGVDEHDYYDEWSGKFKTFKSKQWTDQKGYPCYNFWDIDSEHPRTAVNYSVRLA*
Ga0098063_1027470Ga0098063_10274701F030463MTEITEMIAIIGIITGSLFGLFRYEISKLCKEIDTVRYDIKEIHDKVFH*
Ga0098063_1030182Ga0098063_10301821F039681PIDEVLSFISESDKCEQLHAGNDTDFDKTWLITPDMSFFSYKISLSFGIGLKVSAYTSGNITVDNIHLTLTEVVDGAGDTVIADLKIPTGASALSATGEQIIMFHADIMNKIRFNNNKPIKVRLQTESTKSGTATYQVGILPVYPMIPTAVPKEWLLSQVEIHLHASLDHAFPIWRDSDNDQRLDYSGCSPDGCNSALGEMGTV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.