NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006958

3300006958: Marine sponge C. singaporensis. microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', co31is



Overview

Basic Information
IMG/M Taxon OID3300006958 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117787 | Gp0124749 | Ga0101660
Sample NameMarine sponge C. singaporensis. microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', co31is
Sequencing StatusFinished
Sequencing CenterUniversity of New South Wales
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size12073252
Sequencing Scaffolds22
Novel Protein Genes24
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
All Organisms → cellular organisms → Eukaryota3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1
Not Available5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED2281

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelocarteria Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUpa-Upasina
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000479Metagenome / Metatranscriptome1092Y
F008031Metagenome / Metatranscriptome340Y
F011766Metagenome287Y
F017657Metagenome239Y
F025141Metagenome / Metatranscriptome203Y
F033840Metagenome176Y
F041143Metagenome / Metatranscriptome160N
F047732Metagenome149N
F051941Metagenome / Metatranscriptome143N
F053330Metagenome141Y
F056174Metagenome138Y
F057290Metagenome136N
F064728Metagenome / Metatranscriptome128Y
F067211Metagenome / Metatranscriptome126N
F067755Metagenome125N
F076163Metagenome / Metatranscriptome118Y
F085224Metagenome111N
F087138Metagenome / Metatranscriptome110Y
F092196Metagenome107N
F104985Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101660_100145All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis3684Open in IMG/M
Ga0101660_100643All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1601Open in IMG/M
Ga0101660_100654All Organisms → cellular organisms → Eukaryota1586Open in IMG/M
Ga0101660_100774All Organisms → cellular organisms → Eukaryota1454Open in IMG/M
Ga0101660_100884All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1340Open in IMG/M
Ga0101660_101016All Organisms → cellular organisms → Bacteria1231Open in IMG/M
Ga0101660_101097All Organisms → Viruses → Predicted Viral1148Open in IMG/M
Ga0101660_101681All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium907Open in IMG/M
Ga0101660_102458All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium737Open in IMG/M
Ga0101660_102820All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium684Open in IMG/M
Ga0101660_103026All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium662Open in IMG/M
Ga0101660_103208All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium644Open in IMG/M
Ga0101660_103212Not Available644Open in IMG/M
Ga0101660_103363Not Available630Open in IMG/M
Ga0101660_103374Not Available629Open in IMG/M
Ga0101660_103410All Organisms → cellular organisms → Eukaryota626Open in IMG/M
Ga0101660_103740All Organisms → cellular organisms → Bacteria602Open in IMG/M
Ga0101660_103838Not Available594Open in IMG/M
Ga0101660_104317All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228565Open in IMG/M
Ga0101660_104489All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium553Open in IMG/M
Ga0101660_104968Not Available530Open in IMG/M
Ga0101660_105090All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium524Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101660_100145Ga0101660_1001452F025141MIQCEYCTKGFIETANGLAEKTFHELLHGAKVVNK*
Ga0101660_100643Ga0101660_1006432F047732MQRGYAICTTDLKRILTIAPCKTKFIFVPITSGQVLTDAICFTDISNAKTIVSRAAKKFEGMPETKIVNVALLYNRIDKQNELSNL*
Ga0101660_100654Ga0101660_1006542F085224LLKRWDGRYGMMWHRTDYYGQRKAGGFSNIAYGKDSAPDPNDSVNHEALHYWLEKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLAKSNSTPA*
Ga0101660_100774Ga0101660_1007741F085224LLKRWDGRYGMMWHRTDYYGQRKAGGFSNIAYGADSAPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLRTRARMDKIRDERWAEIKRDLTKTSSTPA*
Ga0101660_100884Ga0101660_1008842F041143MIDNPRISGIDWQGLQKGDLVPHHQVKEFFHSIFPDKEWDDFSMVKVIDKLMKLRETINRPLIIKEVYKDQSLRVLTDKESVDYSAQQANAGIKKHRRHTRRLFTHINKDNLDPAKQRELETKQIHHAFIASAADGARKESLQLQRKGERLPKSLIEKSDFKKSS*
Ga0101660_101016Ga0101660_1010163F017657MMMMDNNRKEALDKATKAKQKMAVEAEMMKQIQPTVPEVTAENIDMQPAIIPKPKPEGPVVGANVFNPGKLYPGISGTSKLAANWN
Ga0101660_101097Ga0101660_1010973F033840MSVFDYRLNRREQLVRKGEPIDNSVDFSGKTSPDFRNKFIAKMKDTNKMYQRESPGQFDDQRADVVRNNLTAQADDLGQFNDPTDQIKSDAFLAKFRRSMLVNEEEKPNRQGILQYMQGDPKGPPVNGQFPTDGVKVS*
Ga0101660_101681Ga0101660_1016811F076163PDRRVSDRVRDDRTSLVVKASTDRPAYVYGASIAIAQDTPSGGLPSYPASPITADLGGTTTELLLLGPDNGGNPIGVPATQALGNAAASSTLTCASSLFTQGSENVTLAKIPFWTSVTTAGIDDQDAANAMLYKVTADTTFKVYNVDAVTGTTVSGDGVFISADDSTAGRAAYIVCRVNYLRPAKAVTWDDVSSFVDFASQVGGTDS*
Ga0101660_102458Ga0101660_1024582F076163ADRPAYIYSASICIGQDIPSAGEPSYPATPLTADIDGTNTEILLFGPDNSGSPYGVPATQANGLAAATAITTAFSSGTIAQGESDVSVAEAPFWTAVTTSGIDDQDAANAMMYRVTADTTFKVYNVNAVTSTSVDGDGVFISSDDKDAGKAAYIICRVNYLRPAAATTFMDIVGSLDFASQVGGSDS*
Ga0101660_102623Ga0101660_1026231F011766PIDICFYLVNVGTVSNTNQFFPLFVSSVEAVGSEVVYSLTDKEDLPFINHPVLQAGTNLGSANSNKALKSRGLMLKRGQALYAAVSGSTALTNGFYVGVQGGFY*
Ga0101660_102820Ga0101660_1028202F053330MAGTSIYSVYRRTARAAAKQQVVKKTSSVDVDKARSDFAY
Ga0101660_103026Ga0101660_1030263F056174KNKNTKRKGLSGGVRYGPPPKKGPNPQGINVSDAKKLLRKSSTKA*
Ga0101660_103208Ga0101660_1032082F067211PVIASLLGAAVTALAVFLKKNMTAVALLKYGPLVQKAYDIIDPVLDKNLSNWDGSKVDRAFELAVESVADGELSSAEIKKLAVHMAQSWLPGAAAEQVRLLEQNGMPLEQRKAAEDITAKVNTAS*
Ga0101660_103212Ga0101660_1032122F057290FYKNFEKEQERTRKAAERMALLGYGLPWTGNKDIEFGQRNAPEEVAQFDPTLVTMKLTDTIRRDEGELNRDGRILNNAATTLMSMQKVLNLDFDLIEDVRIGLLTQPLTDFTPDFQFGEVEGGTYLNGERITGAGVSSMDCSTYNPGVEQSINVDAGLYIN*
Ga0101660_103363Ga0101660_1033632F051941MATSFKNMIYDLTPTTSEKTVYGVPTDSHSIINAFYVNNTDPFSSIFVEVRLDRGPNRPYVASTTSLFSVELASNQYLNLLTGPLVLEGGDKLVFTTNTTGRVQGTIAAMQVNREDQETTPIG
Ga0101660_103374Ga0101660_1033741F000479EVLEKAHQSIASVSKRNKQAIIDSYGRALTMKKVIDDFIKVNRNLIIDMGIGENANLLHGKDYSLHVSQKLSVKVDSNLVKEKLGELEYHKCKVPTQYKQIQALPKEEATVRRNKKATVEEVADFRITA*
Ga0101660_103410Ga0101660_1034101F085224YSIWSGVMLELLEMGVPVFYPSKILLKRWHERYGMVYQRSSGGCRSAGGFSNIAYGKDSAPDPNDSVNREALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKTSSKPA*
Ga0101660_103740Ga0101660_1037403F067755AITSGLAAFTGVIKSLNGFNEKIQRRFNKLQDEINRVEDDMIRGYVLKQDFIREMDVVHQKLDRILELMIKQNSK*
Ga0101660_103838Ga0101660_1038382F087138KPKLIGSGCSDSGSLSVVDPTHIGVSETGKIRLPAVGLGTVFETEVGDGEFQVYELRDRTGRLRRIVIDLE*
Ga0101660_104045Ga0101660_1040451F104985YDILNETAGTAVLDAIASDMENMDKKEVDTDMLANAADSMFTALMWNAGAATLTPVITKSLGKVGRLAIGAKSKDAKELVNIARDKGLPLPMVMTAQEGTGLLGGFANKYFKVLGIMPFINGIGREALQGAEQKAGREYLNNSVLTYGPLIKTGMLSATIWKQADEAFKQNSNLINTSYKAFDTLADTIGNPK
Ga0101660_104317Ga0101660_1043171F064728DVPKIDAKDITPEQITERMQQLDASVPAPIYDEKTIPKNNYETLFAQDFSGSSGDLQTDNNAVTFLSTATQKEAEVDVEEAPIEEQEKKLVMEDLQLEDPVASPPTAPTLPNTGQVTSQQVADLFPNDPTSIAAARRREAGRV*
Ga0101660_104489Ga0101660_1044891F076163NGGVPFGVPSTQQNGLAAASSSIQASSSLFAQGLTDTTTGDLPFWTVVTGGGITAANAANSMMYKVTADTTFKVFNVDAIANTTVSGDGVFISQADSDAGRAAYILGRVNYLRPAKGVSWNDIQGFIDFPSQVGGGDA*
Ga0101660_104968Ga0101660_1049683F092196MNTYRIKIKQVYVETVFAEAESKEDAIQMVWSDDCRLEGSEYKSAEADIQSVEEV*
Ga0101660_105090Ga0101660_1050901F008031MATYKSDAGAILEPGNQINRLSSFNHEGVKGWPGVEAFEQIGFVKINNASADKASFKSFDITVPSPDRRVSDRVRDDRTTLVVKASSARPAYVYGASLALAQDDPSGGLPSFPASPITADLVGTNTEVLLLGPNNGGSPFGIPSTQQNGLAAATSSIAFSGTTIAQGTGSV
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