| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006886 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117890 | Gp0125662 | Ga0102494 |
| Sample Name | T0 (3) T65 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Shell Corporation |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 80645783 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Epsilonproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Methanogenic Incubations Using Athabaskan Oil Sands From Alberta Canada |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Oil Sands → Methanogenic Incubations Using Athabaskan Oil Sands From Alberta Canada |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → oil reservoir → sand |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Alberta, Canada | |||||||
| Coordinates | Lat. (o) | 57.02 | Long. (o) | -111.65 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025668 | Metagenome | 200 | Y |
| F048134 | Metagenome / Metatranscriptome | 148 | Y |
| F059711 | Metagenome | 133 | Y |
| F102132 | Metagenome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0102494_104429 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Epsilonproteobacteria | 2209 | Open in IMG/M |
| Ga0102494_105928 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae | 1821 | Open in IMG/M |
| Ga0102494_106026 | All Organisms → cellular organisms → Bacteria | 1798 | Open in IMG/M |
| Ga0102494_106263 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 1757 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0102494_104429 | Ga0102494_1044292 | F102132 | MSTRKVIKNLEAAIDRICEDIKDKKTGSGSDKLDSLAKLVNSYGRLIERKKEKAYDKMMDGDPKQYKRMLKAGNKDMKGIIR* |
| Ga0102494_105928 | Ga0102494_1059283 | F025668 | MTKESIIEAQDYLRIKTEDGYKRIIDIHALFKRHNTNEVIKFLKDYLREKTNSLKSMIVIDKTHQKVDRIVAAMFRISMAIKSLEEGEEVIILERPEQGAKESGKLHKWHSGGHNR |
| Ga0102494_106026 | Ga0102494_1060262 | F048134 | MESRTNVQINLSIPEQYRNLLRRMAAERVMSDPSQVVTGASIATELLLEALKEISGETKKEGENK* |
| Ga0102494_106263 | Ga0102494_1062631 | F059711 | SINLLIEPGLYTKLKMIATMKKTSMSKIIRAGISLWIDQYEKANNIIQTKKEDMDHECSDSEENRK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |