| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006837 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117429 | Gp0125103 | Ga0101937 |
| Sample Name | Combined Assembly of Gp0125103, Gp0125104, Gp0125105 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Shell Corporation |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 113873044 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 7 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin060 | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26207 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Sediment (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | UK (Newcastle upon Tyne) | |||||||
| Coordinates | Lat. (o) | 54.971158 | Long. (o) | -1.703654 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F050777 | Metagenome / Metatranscriptome | 145 | N |
| F054136 | Metagenome | 140 | Y |
| F064732 | Metagenome / Metatranscriptome | 128 | Y |
| F074913 | Metagenome / Metatranscriptome | 119 | Y |
| F090409 | Metagenome | 108 | Y |
| F091989 | Metagenome / Metatranscriptome | 107 | Y |
| F100040 | Metagenome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0101937_1017600 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin060 | 1350 | Open in IMG/M |
| Ga0101937_1026347 | All Organisms → cellular organisms → Archaea | 996 | Open in IMG/M |
| Ga0101937_1031367 | Not Available | 871 | Open in IMG/M |
| Ga0101937_1043282 | Not Available | 674 | Open in IMG/M |
| Ga0101937_1060669 | Not Available | 510 | Open in IMG/M |
| Ga0101937_1061934 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26207 | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0101937_1017600 | Ga0101937_10176001 | F090409 | MRKEFAGTLLTSFGMMGSVHFNLELPGSIIGDTNQFLEEAKGKRVLVT |
| Ga0101937_1025205 | Ga0101937_10252052 | F100040 | MTNTRARPDLEKMISLGRKGIIDPDHMKRWGEFKKEWAEADLIIWNKLKERMATGDSGALELRPPLSPSEKEWAKKIITQAEERNLC* |
| Ga0101937_1026347 | Ga0101937_10263471 | F064732 | MVSEFKWRDTEAEAEAALAAAPERCTMPPAQSAERHVKYPLSLMVPGLCTVAIATRSTDQPDPPVHPGRPEDTN* |
| Ga0101937_1031367 | Ga0101937_10313671 | F050777 | SPVKISFDMGDLNLTSGAASSLISIEGKLPEEVQAMQWLVPLEDLKILQDLIPPDTYYWENRAIILEWQCDLVVDSTIDEKSPLESLDQEEEYRDQLLVTNREYRQLQMELDDCNAHIPQVLFSIYPDRLNFAVNCSEHDEIVGTMIQMRSQKEE* |
| Ga0101937_1043282 | Ga0101937_10432821 | F054136 | MIENKAQLLADLAYVGSKVQAKTNVYIFSGAAFLWHGLKDATKDIDICCSYEEADRIVSALRMFGNMESVTGINDVHFLRIIFKSFSLQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPD |
| Ga0101937_1060669 | Ga0101937_10606692 | F074913 | MGLLPCVAVARVFALVVRCRIIRLIVNSRVGKNRDTRRESPGVPGAARGASHKLFLLSYIIVAPRKAMTYTD |
| Ga0101937_1061934 | Ga0101937_10619341 | F091989 | MKLSTYARDITNRARANCYATDATRASDPLIRPCGEFDELQVTLKSLQGTTMALCWVNSEGKAVPFNEAEFNAVQKEIADLQGKINHNTKILDALDAKVAKLGLTEPSIGKLKAQKEKLREQINQIRAEEKDSLANKWQAVVTLGGNRGMYDALQEAVSYTQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |